Alignments for a candidate for cysK in Desulfovibrio vulgaris Miyazaki F

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate 8501944 DvMF_2658 cysteine synthase (RefSeq)

Query= BRENDA::P9WP55
         (310 letters)



>FitnessBrowser__Miya:8501944
          Length = 310

 Score =  368 bits (944), Expect = e-106
 Identities = 187/310 (60%), Positives = 226/310 (72%)

Query: 1   MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 60
           M IA D+T+L+GRTPLVRL RV++G  A++VAKLEF NP  SVKDRI +AM+  A + G 
Sbjct: 1   MEIARDMTELVGRTPLVRLNRVSEGCAAEVVAKLEFNNPCASVKDRIALAMIDGAMERGE 60

Query: 61  IKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 120
           + P  +++EPTSGNTG+ LA V A RG   VLTMPE+MS ER+ LLR +GA L+LTP + 
Sbjct: 61  LAPGGLLVEPTSGNTGVGLAFVAAVRGLTLVLTMPESMSNERKALLRGFGARLVLTPASK 120

Query: 121 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 180
           GM GAI +AE +        +  QF NP NP +HR TTAEE+W DTDGKVD  VAGVGTG
Sbjct: 121 GMRGAIEEAERIVAETPGAVMLGQFVNPDNPLVHRKTTAEEIWADTDGKVDAFVAGVGTG 180

Query: 181 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 240
           GT+TG  + ++E  P  +  AVEP  SPVLSGG  GPHPIQGIGAGFVPPVLD  + DEI
Sbjct: 181 GTVTGTGRRLRELNPDIKVFAVEPDESPVLSGGAPGPHPIQGIGAGFVPPVLDTKVYDEI 240

Query: 241 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYL 300
           I V  +DAL  ARRL REEG+L G+SSGA   AA+ VARRPE AGK +V V+ D GERYL
Sbjct: 241 IRVPGKDALVTARRLLREEGILCGVSSGANAFAAMAVARRPEMAGKRVVFVVCDTGERYL 300

Query: 301 STPLFADVAD 310
           STPLF ++ D
Sbjct: 301 STPLFTEMPD 310


Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 343
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 310
Length adjustment: 27
Effective length of query: 283
Effective length of database: 283
Effective search space:    80089
Effective search space used:    80089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate 8501944 DvMF_2658 (cysteine synthase (RefSeq))
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.9507.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9507.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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