Alignments for a candidate for hisD in Desulfovibrio vulgaris Miyazaki F

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate 8502101 DvMF_2814 histidinol dehydrogenase (RefSeq)

Query= BRENDA::Q8G2R2
         (430 letters)



>FitnessBrowser__Miya:8502101
          Length = 434

 Score =  336 bits (862), Expect = 7e-97
 Identities = 190/428 (44%), Positives = 257/428 (60%), Gaps = 4/428 (0%)

Query: 4   TLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDLEK 63
           TL     D  ++  A L+G+    + V+ AVREI+D VR  GD+AL DY+ RFD    + 
Sbjct: 5   TLFLRSVDDWKELQALLAGRDNPGDTVEPAVREILDTVRAGGDAALADYTSRFDCPGFDA 64

Query: 64  TGIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSRWTA 123
             I V E EI AA +         +  A   I   H  Q  +    T   G  LG   T 
Sbjct: 65  ARIRVGEDEIAAALEEVGPDDRAIIAEAAANIRAFHEAQKEQSWFTTRPDGSVLGQMVTP 124

Query: 124 IEAVGLYVPGGTASYP---SSVLMNAMPAKVAGVDRIVMVVPA-PDGNLNPLVLVAARLA 179
           ++  GLYVPGG        SS+LMNA+PA+VAGV  I ++ P   DG LNP +L AA   
Sbjct: 125 VDRAGLYVPGGQGGNTPLISSLLMNAIPAQVAGVPEIAVISPPRKDGTLNPFILAAAHHL 184

Query: 180 GVSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEV 239
           G++E++R G A AIAALA+GTET+RPV  I GPGN +V  AKR++ G VGIDMIAGPSE+
Sbjct: 185 GITEVHRAGSAWAIAALAFGTETVRPVDVIAGPGNIWVTTAKRLLIGRVGIDMIAGPSEI 244

Query: 240 LIVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETAS 299
           LI+AD     DW+AAD+L+QAEHD  A SI +T+  A   A++  +  Q  TL R + A 
Sbjct: 245 LILADHTARADWVAADMLSQAEHDPLASSICITDSPALVDALKLELAAQCDTLPRADIAR 304

Query: 300 ASWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVI 359
            +  D+GA+++V D    I + N++A EHLE+   D  A +  IR+AG++F+GG++PE +
Sbjct: 305 KALADWGAIVVVPDMATGIGITNKVAPEHLEVLTKDPWALLGTIRHAGAVFLGGWSPEPV 364

Query: 360 GDYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDA 419
           GDY  G NHVLPT  +ARFSS LSV  + KRTS++   +   R    +   +AR EGL+A
Sbjct: 365 GDYYAGPNHVLPTMGTARFSSALSVQTFCKRTSVISATAAFTRGHAASIARLARLEGLEA 424

Query: 420 HAQSVAIR 427
           HA+S   R
Sbjct: 425 HARSAESR 432


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 489
Number of extensions: 27
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 434
Length adjustment: 32
Effective length of query: 398
Effective length of database: 402
Effective search space:   159996
Effective search space used:   159996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 8502101 DvMF_2814 (histidinol dehydrogenase (RefSeq))
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.30036.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30036.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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