Alignments for a candidate for hisF in Desulfovibrio vulgaris Miyazaki F

Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate 8501585 DvMF_2304 imidazole glycerol phosphate synthase subunit HisF (RefSeq)

Query= SwissProt::Q7SIB9
         (252 letters)



>FitnessBrowser__Miya:8501585
          Length = 259

 Score =  255 bits (652), Expect = 5e-73
 Identities = 132/256 (51%), Positives = 178/256 (69%), Gaps = 7/256 (2%)

Query: 3   LAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAI 62
           L+KRI+PCLDV  GR+ KGV F    D GDPVE AR Y E GADE+VF DI+A+HE+R I
Sbjct: 2   LSKRIIPCLDVRNGRLTKGVKFEGNVDIGDPVETARRYYEQGADEIVFYDITASHEDRGI 61

Query: 63  LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFG 122
            LDVV RVA  +FIP +VGGG+ ++ED R +L++GA+KVSVNS AV+ P++I + A  FG
Sbjct: 62  FLDVVERVASEIFIPFSVGGGINTVEDMRAVLVAGAEKVSVNSGAVKNPDIISQGAAAFG 121

Query: 123 AQAVVLAIDARWRGDFP------EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDR 176
           +QA+V+ +D +            E+ + GGR   G+ A+EWA     LGAGE+ + S+D 
Sbjct: 122 SQAIVVGMDVKQVQKSEAIPSGYEIVIHGGRKFMGMDAIEWAKTCEALGAGELCVNSIDA 181

Query: 177 DGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFGEIPI 235
           DGTK+GY+L LTRM+A+AV +PVIASGGAG   H  +A  + GA AAL AS+ H+G+  I
Sbjct: 182 DGTKDGYELTLTRMIADAVSIPVIASGGAGSPAHMYDAITRGGATAALIASIVHYGQYTI 241

Query: 236 PKLKRYLAEKGVHVRL 251
           P LKR ++  G  +R+
Sbjct: 242 PDLKRQISGMGAKLRM 257


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 259
Length adjustment: 24
Effective length of query: 228
Effective length of database: 235
Effective search space:    53580
Effective search space used:    53580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate 8501585 DvMF_2304 (imidazole glycerol phosphate synthase subunit HisF (RefSeq))
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.308.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.308.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.