Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate 8501586 DvMF_2305 imidazole glycerol phosphate synthase subunit HisH (RefSeq)
Query= reanno::Miya:8501586 (212 letters) >FitnessBrowser__Miya:8501586 Length = 212 Score = 444 bits (1143), Expect = e-130 Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MLAILDYKAGNQTSVRRALDHLGIPCVITADPAVIAGAHGVIFPGVGAAGQAMNELLTTG 60 MLAILDYKAGNQTSVRRALDHLGIPCVITADPAVIAGAHGVIFPGVGAAGQAMNELLTTG Sbjct: 1 MLAILDYKAGNQTSVRRALDHLGIPCVITADPAVIAGAHGVIFPGVGAAGQAMNELLTTG 60 Query: 61 LDKVLKDQVQAGKPLLGICVGCQIMLDYSQENDTKALGIVPGECRLFNAAWTEEDGTPIR 120 LDKVLKDQVQAGKPLLGICVGCQIMLDYSQENDTKALGIVPGECRLFNAAWTEEDGTPIR Sbjct: 61 LDKVLKDQVQAGKPLLGICVGCQIMLDYSQENDTKALGIVPGECRLFNAAWTEEDGTPIR 120 Query: 121 VPHMGWNSIVQKRPCELLKGIEPEAEFYFVHSYYPAPPESYVIATCTYGEEFCAIHGGPG 180 VPHMGWNSIVQKRPCELLKGIEPEAEFYFVHSYYPAPPESYVIATCTYGEEFCAIHGGPG Sbjct: 121 VPHMGWNSIVQKRPCELLKGIEPEAEFYFVHSYYPAPPESYVIATCTYGEEFCAIHGGPG 180 Query: 181 LWAVQFHPEKSGRPGLALLRNFYAYCKEASRA 212 LWAVQFHPEKSGRPGLALLRNFYAYCKEASRA Sbjct: 181 LWAVQFHPEKSGRPGLALLRNFYAYCKEASRA 212 Lambda K H 0.321 0.139 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 332 Number of extensions: 13 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 212 Length of database: 212 Length adjustment: 21 Effective length of query: 191 Effective length of database: 191 Effective search space: 36481 Effective search space used: 36481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)
Align candidate 8501586 DvMF_2305 (imidazole glycerol phosphate synthase subunit HisH (RefSeq))
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))
../bin/blast/fastacmd -i /tmp/list.4113.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4113.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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