Alignments for a candidate for prs in Desulfovibrio vulgaris Miyazaki F

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate 8499722 DvMF_0487 ribose-phosphate pyrophosphokinase (RefSeq)

Query= SwissProt::P0A1V6
         (315 letters)



>FitnessBrowser__Miya:8499722
          Length = 312

 Score =  334 bits (857), Expect = 1e-96
 Identities = 167/311 (53%), Positives = 226/311 (72%), Gaps = 3/311 (0%)

Query: 3   DMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62
           D+K+  G + P LA+ I N L   L  A    FSDGE+ ++I +NVRG D+F++Q+TC+P
Sbjct: 4   DLKILTGTSNPALAKAICNHLGCQLTPALCETFSDGEIRIEIGDNVRGDDVFVVQATCSP 63

Query: 63  TNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGV 122
            N NLM+L +M+DAL+RASAGR+TAV+PY+GYARQDR+V S R PI+AK+VADFL++ G 
Sbjct: 64  VNYNLMQLCLMLDALKRASAGRVTAVVPYYGYARQDRKV-SPRAPISAKLVADFLTTAGT 122

Query: 123 DRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNLDNPIVVSPDIGGVVRARAIAK 182
           DRV+TVDLHA QIQGFF+VPVDN++  P++LE  L+    + ++VSPD GGV RAR+ AK
Sbjct: 123 DRVVTVDLHAGQIQGFFNVPVDNLYAQPVILE-YLRPYAGDIVIVSPDAGGVERARSFAK 181

Query: 183 LLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAK 242
            LN   +AIIDKRR R N +  MH+IGDV  +  ++VDDMIDT GT+C A E L + GAK
Sbjct: 182 KLN-AGLAIIDKRRDRPNQASAMHVIGDVRDKIAIVVDDMIDTAGTMCAAGEVLLKNGAK 240

Query: 243 RVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLTDEIKALPNVRTLTLSGMLAEAIRR 302
            V A ATHP+ SG A   L NS   +V+V DT+PL D++ A   ++ L+++G+LA+AI  
Sbjct: 241 EVMACATHPVLSGPAIERLCNSTFSQVIVTDTVPLGDKLAACSKLKVLSVAGLLAKAIHN 300

Query: 303 ISNEESISAMF 313
           I  E S+S +F
Sbjct: 301 IHTESSVSVLF 311


Lambda     K      H
   0.322    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 296
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 312
Length adjustment: 27
Effective length of query: 288
Effective length of database: 285
Effective search space:    82080
Effective search space used:    82080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate 8499722 DvMF_0487 (ribose-phosphate pyrophosphokinase (RefSeq))
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.3448.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3448.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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