Alignments for a candidate for cimA in Desulfovibrio vulgaris Miyazaki F

Align (R)-citramalate synthase (EC 2.3.3.21) (characterized)
to candidate 8499505 DvMF_0275 putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq)

Query= reanno::DvH:207383
         (538 letters)



>FitnessBrowser__Miya:8499505
          Length = 540

 Score =  879 bits (2272), Expect = 0.0
 Identities = 438/538 (81%), Positives = 484/538 (89%)

Query: 1   MRRQIHLYDTTLRDGSQSEDINLNTPDKLKIALRLDELGIAYIEGGWPGSNPVDVAFFKE 60
           M R+I LYDTTLRDGSQSEDINL   DKLKIAL+LDE+GI  IEGGWPGSNPVDVAFFKE
Sbjct: 1   MTRRIQLYDTTLRDGSQSEDINLTAADKLKIALKLDEIGIDRIEGGWPGSNPVDVAFFKE 60

Query: 61  IRNYNLKQAKISAFGSTHHPSHTAENDPNLKAIAAARTDAAAIFGKSCERHAREALRLDG 120
           I NY+LK A ISAFGSTHHP+ TA++DPNL+AIA +    A+IFGKSCE HA EALRLD 
Sbjct: 61  IANYHLKHAVISAFGSTHHPNFTADSDPNLRAIAESGARVASIFGKSCEVHAAEALRLDA 120

Query: 121 RRNLDIIHDSIAFLKKQVAEVFFDAEHFFDGYRHNAAYALEVLRRAHEAGGDVLVLCDTN 180
            RNL+II DS+AFLK ++AEV+FDAEHFFDGYRHNAAYAL  LRRAHEAG DVLVLCDTN
Sbjct: 121 ARNLEIIGDSVAFLKGKLAEVYFDAEHFFDGYRHNAAYALSALRRAHEAGADVLVLCDTN 180

Query: 181 GGTLPHEVHDIVTAVREQLPEAKLGIHAHNDCEVAVANSIAAVQAGAVQVQGTMNGVGER 240
           GGTLPHEV  IVT VRE LP A +GIHAHNDCE+AVANSIAAVQAGAVQ+QGT+NGVGER
Sbjct: 181 GGTLPHEVARIVTEVREALPGAAVGIHAHNDCELAVANSIAAVQAGAVQIQGTINGVGER 240

Query: 241 CGNANLSSVIPILELKSAGAYACLPEGRLQQLTAVSSYVSEVTNLPPFSRQPFVGRSAFA 300
           CGNANL S+IP LELK  G Y CLPEGRLQQLTAV++YVSEV N+PPFSRQP+VGRSAFA
Sbjct: 241 CGNANLCSIIPTLELKFGGEYTCLPEGRLQQLTAVAAYVSEVANIPPFSRQPYVGRSAFA 300

Query: 301 HKGGVHVSAVNRNATLYEHITPESVGNHQRVLITELAGRSNIVSLARRFGFHLDKDEPVV 360
           HKGGVHVSAVNR ++LYEHI+P+ VGN QR+LITELAGRSNIVSLARRFGFHLDKDEPVV
Sbjct: 301 HKGGVHVSAVNRKSSLYEHISPDVVGNRQRILITELAGRSNIVSLARRFGFHLDKDEPVV 360

Query: 361 KGLMNELKKKASLGYDYAAAEASVELLLLRKLARRGVREFFKLIQFRVLESKQENDLEPM 420
           KGL+ ELKKKASLGYDYAAAEASVELL+LRKLARRGVREFF+L+QFRVLE+K +++ EP+
Sbjct: 361 KGLLTELKKKASLGYDYAAAEASVELLILRKLARRGVREFFRLLQFRVLETKHDSEGEPV 420

Query: 421 SEASVMVEVEGIIEHTAATGRGPVNALDNALRKALSSFYPRIREMRLLDFKVRVLTGTET 480
           SE SVMV+VEG+ EHTAATGRGPVNALDNALRKAL  FYPR+ EMRLLDFKVRVLTG ET
Sbjct: 421 SEVSVMVDVEGVTEHTAATGRGPVNALDNALRKALLGFYPRLSEMRLLDFKVRVLTGAET 480

Query: 481 DGGTASTVRVLIESGDADSRWVTVGVSYNIIEASWQALADSMTYKLYKDEHVQRGMTD 538
            GGTASTVRVLIESGD+DSRWVTVGVS+NIIEASWQALADS+TYKLYKDEH +R  +D
Sbjct: 481 GGGTASTVRVLIESGDSDSRWVTVGVSFNIIEASWQALADSVTYKLYKDEHARRAGSD 538


Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 890
Number of extensions: 26
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 540
Length adjustment: 35
Effective length of query: 503
Effective length of database: 505
Effective search space:   254015
Effective search space used:   254015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate 8499505 DvMF_0275 (putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq))
to HMM TIGR00977 (cimA: citramalate synthase (EC 2.3.1.182))

Software error:

../bin/blast/fastacmd -i /tmp/list.22942.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22942.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.