Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate 8501301 DvMF_2034 dihydroxy-acid dehydratase (RefSeq)
Query= metacyc::MONOMER-11919 (549 letters) >FitnessBrowser__Miya:8501301 Length = 555 Score = 575 bits (1481), Expect = e-168 Identities = 290/555 (52%), Positives = 401/555 (72%), Gaps = 7/555 (1%) Query: 1 MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60 M+S + G+++APHRSLL GLT ++ E+P +G+ N+ ++VPGH+HL +AEAVK G Sbjct: 1 MRSKKMTHGLEKAPHRSLLHALGLTREEIERPLVGVVNAANEVVPGHVHLHTIAEAVKAG 60 Query: 61 VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120 V AAGG EF +A+CDG+AMNH+GM +SL SREI+AD++E MA AH D LV +P CD Sbjct: 61 VRAAGGTPMEFPAIAVCDGLAMNHEGMHFSLPSREIIADSIEIMATAHPFDALVFIPNCD 120 Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180 K VPGMLMA R+DIP+I+V+GGPML G + DLI+V+E VG V G+M+ EL+E+ Sbjct: 121 KSVPGMLMAMLRMDIPSIMVSGGPMLAGGTLAGRTDLISVFEAVGRVQRGDMTMAELDEM 180 Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240 ACPG SCAG+FTANTM C+ E +G++LPG T AV++ + ++A+ +G +++E+++ Sbjct: 181 TETACPGCGSCAGMFTANTMNCMAETMGLALPGNGTIPAVTAARVRLAKHAGMKVMELLE 240 Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPH 300 +N+ P I++ A NAV VD+ALGGSTNT LH+PA+ E GL++ LD+FDE+SR P+ Sbjct: 241 KNITPRSIVTPRAVANAVAVDMALGGSTNTVLHLPAVFGEA-GLDLTLDIFDEVSRKTPN 299 Query: 301 IASISPAGEHMMLDLDRAGGIPAVLK--TLEDHINRECVTCTGRTVQENIE--NVKVGHR 356 + +SPAG H + DL AGGIPAV+ T + ++ +T TG+T+ EN+ N +V + Sbjct: 300 LCKLSPAGHHHIQDLHAAGGIPAVMAELTRKGLVDTSVMTVTGKTLAENLAELNARVLNP 359 Query: 357 DVIRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIF 416 DVIR D+P ++GG+AIL+G+LAP+G+VVKQ AVA +MMV E A+VF+SE E AI Sbjct: 360 DVIRSADAPYSAQGGIAILKGSLAPQGAVVKQSAVAPEMMVREAVARVFDSEGEAHAAIM 419 Query: 417 GGRIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGL-ERVALITDGRFSGGTRGPCVG 475 GG+I++GD I+IRYEGP+GGPGMREML+PT+AIAGMGL VALITDGRFSGGTRG +G Sbjct: 420 GGKINKGDAIIIRYEGPRGGPGMREMLSPTAAIAGMGLGADVALITDGRFSGGTRGAAIG 479 Query: 476 HVSPEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSVKG-WLAR 534 HVSPEA + G + V +GD I IDIP+R+L++ + E+ R ++ V + V L R Sbjct: 480 HVSPEAADGGNIGLVREGDHILIDIPARRLDLLVDEAELAARRETFVPLEKPVTSPLLRR 539 Query: 535 YRKLAGSADTGAVLR 549 Y + SA TGA+ R Sbjct: 540 YARQVTSAATGAMYR 554 Lambda K H 0.319 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 992 Number of extensions: 59 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 549 Length of database: 555 Length adjustment: 36 Effective length of query: 513 Effective length of database: 519 Effective search space: 266247 Effective search space used: 266247 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate 8501301 DvMF_2034 (dihydroxy-acid dehydratase (RefSeq))
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.27110.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27110.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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