Alignments for a candidate for ilvI in Desulfovibrio vulgaris Miyazaki F

Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate 8501148 DvMF_1883 acetolactate synthase catalytic subunit (RefSeq)

Query= BRENDA::P9WG41
         (618 letters)



>FitnessBrowser__Miya:8501148
          Length = 615

 Score =  449 bits (1156), Expect = e-130
 Identities = 268/594 (45%), Positives = 341/594 (57%), Gaps = 24/594 (4%)

Query: 8   HSPTFKPEPHSAANEPKHPAARPKHVALQQLTGAQAVIRSLEELGVDVIFGIPGGAVLPV 67
           H+P+ +  P +A+     P  R       Q  GA  VIR LE  G+DVI GIPGGA LP+
Sbjct: 4   HTPS-RTAPGTASGAAPTPRKR-------QPNGADLVIRLLERQGIDVIAGIPGGANLPL 55

Query: 68  YDPLFDSKKLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDS 127
           YD L  +  +RHVL RHEQGAG  A G A VTGR  V  ATSGPGATN +T +ADA++DS
Sbjct: 56  YDALGRAGSIRHVLARHEQGAGFMAQGMARVTGRPAVFFATSGPGATNTLTAIADAKLDS 115

Query: 128 IPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGR 187
           +PVV ITGQV  GL+G+DAFQE DI G+++P+TKHNFLVRS +++  V+  AF IAASGR
Sbjct: 116 VPVVCITGQVPLGLVGSDAFQEVDIYGMSIPVTKHNFLVRSVEELAEVIPAAFRIAASGR 175

Query: 188 PGAVLVDIPKDVLQG---QCTFSWPPRMELPGYKPNTKPHSRQVREAAKLIAAARKPVLY 244
           PG VLVDIPK+V      Q  F  PP+   P   P   P    +  AA L+ AA++P+LY
Sbjct: 176 PGPVLVDIPKNVQMAEVDQAVFDNPPQPGQPAAPP--APDPAGISRAAALLNAAQRPMLY 233

Query: 245 VGGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSHRQNLGMPGMHGTVAAVAALQR 304
           +GGGV+   A++   +LAE  G+P V TLMA GA P  H  +LGM GMH        L  
Sbjct: 234 LGGGVVASGASDMAVQLAERAGLPTVMTLMALGAMPAGHPLSLGMLGMHAARHTNLLLAE 293

Query: 305 SDLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDPAEIGKNRHADVPIVGDVKAVITELI 364
            D+L+  G RFDDR  GK + F P A +IH DID +E+ K       I GDV   + EL+
Sbjct: 294 CDVLLVAGARFDDRAVGKAERFCPGATIIHIDIDESELDKILPVHCGITGDVGLALAELL 353

Query: 365 AMLRHHHIPGTIEMADWWAYLNGVRKTYPLSYGPQSDGSLSPEYVIEKLGEIAGPDAVFV 424
            +LR     G      W   +   R+ +P    P +D   +P  +I    +    DA+  
Sbjct: 354 PLLRTRAEAG---REAWLTRVEECRRRHPFVM-PGADDPRTPYGLIRCAADAVDHDAIVA 409

Query: 425 AGVGQHQMWAAQFIRYEKPRSWLNSGGLGTMGFAIPAAMGAKIALPGTEVWAIDGDGCFQ 484
             VGQHQM  AQ      PR WL SGGLGTMGF +PAA+GA +A P   V    GDG  Q
Sbjct: 410 TDVGQHQMRTAQAYPLRGPRRWLTSGGLGTMGFGLPAAIGAALARPEATVLCFTGDGSLQ 469

Query: 485 MTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQTDLATHSHRIPDFVKLA 544
           M  QELAT A EG+ VK+ L +N  LG+VRQ Q LFY  R     +A+   R  DF ++A
Sbjct: 470 MNIQELATAAEEGVNVKILLADNNALGLVRQQQELFYEGRL----VASTYRRKVDFARIA 525

Query: 545 EALGCVGLRCEREEDVV-DVINQARAINDCPVVIDFIVGADAQVWPMVAAGTSN 597
           E  G   +  +  E  + D+ +  RA   C  +I   V A A V+PMV  G  N
Sbjct: 526 EGFGVPAVDLDASEHPLRDLADALRAPGPC--LIRVTVPAGANVYPMVPPGADN 577


Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1163
Number of extensions: 64
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 615
Length adjustment: 37
Effective length of query: 581
Effective length of database: 578
Effective search space:   335818
Effective search space used:   335818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate 8501148 DvMF_1883 (acetolactate synthase catalytic subunit (RefSeq))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.14480.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14480.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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