Alignments for a candidate for leuA in Desulfovibrio vulgaris Miyazaki F

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate 8501055 DvMF_1791 2-isopropylmalate synthase (RefSeq)

Query= BRENDA::Q9JZG1
         (517 letters)



>FitnessBrowser__Miya:8501055
          Length = 514

 Score =  531 bits (1367), Expect = e-155
 Identities = 276/512 (53%), Positives = 364/512 (71%), Gaps = 3/512 (0%)

Query: 3   QTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNA 62
           ++ R+ IFDTTLRDGEQSPGA M  +EKIR+ARQLE LGVDI+EAGF A+S GDFEAV A
Sbjct: 4   ESGRIRIFDTTLRDGEQSPGATMNLQEKIRLARQLETLGVDIMEAGFPASSQGDFEAVQA 63

Query: 63  IAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIE 122
           IA+ +    V  L RA+  DI +A EAV  A   RIHTF+ATSP+HM+YKL+ +P QV+E
Sbjct: 64  IARAVKGVEVAGLCRAMPADIDRAWEAVKVAENPRIHTFLATSPVHMQYKLRKEPDQVVE 123

Query: 123 AAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKT 182
            AV AV+ A +YT +VEFS EDA RS  DFL  +  AVI AGATTIN+PDTVGY+ P + 
Sbjct: 124 MAVAAVRHAAKYTSNVEFSAEDASRSNPDFLVRVFEAVINAGATTINVPDTVGYAQPEEF 183

Query: 183 EEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNAS 242
               R +I  TPN  K V+S HCHNDLG+ VAN+LAALK GARQ E T++G+GERAGNAS
Sbjct: 184 GRLIRYVIENTPNSHKAVFSVHCHNDLGMGVANTLAALKAGARQAEVTISGIGERAGNAS 243

Query: 243 VEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIH 302
           +EEIVMAL  R D + L+ G+ T Q+ P+ +L+S I G P+ PNKAIVGANAF+HESGIH
Sbjct: 244 LEEIVMALHTRRDFYQLDCGVVTEQLFPTCRLLSMIIGQPIPPNKAIVGANAFAHESGIH 303

Query: 303 QDGVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFAR 362
           QDG+LK+RETYEIM+ ES+G     L +GK SGRNA K KL +LG  LE E  L   F  
Sbjct: 304 QDGMLKNRETYEIMTPESIGKTKTDLVIGKHSGRNAVKNKLDELGYRLE-EAQLVTVFEA 362

Query: 363 FKELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKIS-TETGEEPRADIVFSIKGEE 421
            K+LADKK++I+DED+ ALV +E+  +  + Y+ ++  +  ++TG  P A +V  + GE 
Sbjct: 363 VKKLADKKKQIYDEDIEALVLEEVYRL-PDLYRLVNLSVQCSDTGMPPTAAVVMDVMGEV 421

Query: 422 KRASATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQ 481
           KRA+  G GP+DA+F  I  +      L+ YSV A+T GT++QGE +VRL +      G+
Sbjct: 422 KRAAGFGVGPIDAVFNVIGEIVGRAPVLERYSVTAITGGTDAQGEVTVRLRQNGSSAVGR 481

Query: 482 GADTDVLVATAKAYLSALSKLEFSAAKPKAQG 513
           G+D D+++A+A+AY++AL++L     + + +G
Sbjct: 482 GSDPDIILASARAYVNALNRLAKKEEEQEKEG 513


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 628
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 514
Length adjustment: 35
Effective length of query: 482
Effective length of database: 479
Effective search space:   230878
Effective search space used:   230878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate 8501055 DvMF_1791 (2-isopropylmalate synthase (RefSeq))
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.10632.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10632.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.