Alignments for a candidate for leuB in Desulfovibrio vulgaris Miyazaki F

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate 8501058 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq)

Query= BRENDA::P93832
         (405 letters)



>FitnessBrowser__Miya:8501058
          Length = 358

 Score =  414 bits (1065), Expect = e-120
 Identities = 219/354 (61%), Positives = 259/354 (73%), Gaps = 1/354 (0%)

Query: 45  ITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAK 104
           I L+PGDGIGPE+V  A  VL +     G   ++    IGGAA+D  G PLP+ET++A K
Sbjct: 5   ICLMPGDGIGPEIVEQAVKVLDKVAKKFGHTVSYTNALIGGAAIDATGGPLPDETVAACK 64

Query: 105 ESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREV 164
            +DAVLLGA+GG KWD     +RPEKGLL IR AL +FANLRPAT+LP+L  A  L+ ++
Sbjct: 65  AADAVLLGAVGGPKWDTLPTAIRPEKGLLGIRKALGLFANLRPATLLPELAGACLLRADI 124

Query: 165 A-EGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKR 223
           A +G+D+MVVRELTGG+YFGEP   +   +G    +NT +Y   E+ RIARVAFE ARKR
Sbjct: 125 AAQGLDVMVVRELTGGVYFGEPVCEEELRDGLRTSYNTMIYNEEEVRRIARVAFEAARKR 184

Query: 224 RGKLCSVDKANVLEASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTN 283
             K+CSVDKANVL  S LWR  V  +A EYPDVEL+HMYVDNAAMQLVR P QFD IVT 
Sbjct: 185 SRKVCSVDKANVLAVSRLWRAVVIEVAREYPDVELTHMYVDNAAMQLVRWPAQFDVIVTE 244

Query: 284 NIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAA 343
           N+FGDILSDEA++ITGSIGMLPSASL  SGPG+FEPIHGSAPDIAGQ+KANP+ATILS A
Sbjct: 245 NLFGDILSDEAAVITGSIGMLPSASLGASGPGIFEPIHGSAPDIAGQNKANPVATILSVA 304

Query: 344 MLLKYGLGEEKAAKRIEDAVLVALNNGFRTGDIYSAGTKLVGCKEMGEEVLKSV 397
           M+L+Y  G EK A  IE AV   L  G+RTGDI   G  LVG   MG  V + V
Sbjct: 305 MMLRYTFGLEKEAVAIEQAVSGVLREGYRTGDIMEEGKTLVGTVSMGNLVTERV 358


Lambda     K      H
   0.316    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 417
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 358
Length adjustment: 30
Effective length of query: 375
Effective length of database: 328
Effective search space:   123000
Effective search space used:   123000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate 8501058 DvMF_1794 (3-isopropylmalate dehydrogenase (RefSeq))
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.17179.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17179.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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