Alignments for a candidate for leuC in Desulfovibrio vulgaris Miyazaki F

Align isopropylmalate/citramalate isomerase large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (characterized)
to candidate 8501056 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq)

Query= reanno::DvH:208495
         (419 letters)



>FitnessBrowser__Miya:8501056
          Length = 418

 Score =  724 bits (1870), Expect = 0.0
 Identities = 359/419 (85%), Positives = 385/419 (91%), Gaps = 1/419 (0%)

Query: 1   MAHTLAQKILQRHTDEAITDAGQIVRCRVSMVLANDITAPLAIKSFRAMGAKRVFDKDRV 60
           MAHTLAQKILQ HTDEAIT AGQIVRCRVS+ LANDITAPLAIKSFRAMGAK+VFD+D+V
Sbjct: 1   MAHTLAQKILQAHTDEAITAAGQIVRCRVSLALANDITAPLAIKSFRAMGAKKVFDRDKV 60

Query: 61  ALVMDHFTPQKDIEAAQQVKLTREFAREMGVTHYYEGGDCGVEHALLPELGLVGPGDVVV 120
           ALVMDHFTPQKDI +AQQVKLTREFAREMGVTHYYEGGDCGVEHALLPELGLVGPGDVVV
Sbjct: 61  ALVMDHFTPQKDIASAQQVKLTREFAREMGVTHYYEGGDCGVEHALLPELGLVGPGDVVV 120

Query: 121 GADSHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPTIRATFTGTLPAYVGAKDLIL 180
           GADSHTCTYGGLGAFATG GSTDVAGAMALGETWFKVPPTIRATFTGTLP +VGAKDLIL
Sbjct: 121 GADSHTCTYGGLGAFATGFGSTDVAGAMALGETWFKVPPTIRATFTGTLPKWVGAKDLIL 180

Query: 181 TLIGAIGVDGALYRALEFDGAAIEALDVEGRMTMANMAIEAGGKAGLFAADAKTLTYCTT 240
            LIG IGVDGALYRALEFDGAAIEAL VEGRMT+ANMAIEAGGKAGLFAADAKTL Y   
Sbjct: 181 RLIGEIGVDGALYRALEFDGAAIEALSVEGRMTIANMAIEAGGKAGLFAADAKTLAYTAA 240

Query: 241 AGRTGDTAFSADAGAVYERELSFDVTGMTPVVACPHLPDNVKPVSEVKDVTVQQVVIGSC 300
            GR  D   SAD GA YEREL+FDV+GM P+VACPHLP+NVKPV EV+ VT+ QVVIGSC
Sbjct: 241 RGRK-DAPLSADPGATYERELTFDVSGMEPLVACPHLPENVKPVGEVRGVTLDQVVIGSC 299

Query: 301 TNGRIGDLREAAAVLRGRKVSRDVRCIVLPATPGIWRQALREGLIETFMEAGCIVGPATC 360
           TNGRI D+REAA VL+GRKV++ VRCIVLPATPG+W++AL+EGLIETFME+GCIVGPATC
Sbjct: 300 TNGRISDMREAAEVLKGRKVAKGVRCIVLPATPGVWKEALKEGLIETFMESGCIVGPATC 359

Query: 361 GPCLGGHMGILADGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGVITDPSTL 419
           GPCLGGHMGILADGERAIATTNRNF+GRMGSLESEVYL+ PA AAASAV G+I  P +L
Sbjct: 360 GPCLGGHMGILADGERAIATTNRNFRGRMGSLESEVYLASPAVAAASAVAGIIAHPGSL 418


Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 718
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 418
Length adjustment: 32
Effective length of query: 387
Effective length of database: 386
Effective search space:   149382
Effective search space used:   149382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate 8501056 DvMF_1792 (3-isopropylmalate dehydratase large subunit (RefSeq))
to HMM TIGR02083 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.6954.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6954.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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