Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate 8501057 DvMF_1793 3-isopropylmalate dehydratase, small subunit (RefSeq)
Query= BRENDA::Q58673
(168 letters)
>FitnessBrowser__Miya:8501057
Length = 163
Score = 167 bits (423), Expect = 8e-47
Identities = 81/159 (50%), Positives = 112/159 (70%)
Query: 7 GRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFGCG 66
G K G ++DTDAI+PAR+LV T ++L + M G + + K+VKPGD++V G+NFGCG
Sbjct: 5 GTAHKVGEHIDTDAIIPARFLVTTDTQKLGENCMAGLEEGWVKRVKPGDVMVAGRNFGCG 64
Query: 67 SSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVNLET 126
SSREHAP+ + GAG+ VIA SFARIFYRNA N+GL L+E +K+ +GD +EV+
Sbjct: 65 SSREHAPIAILGAGMPVVIAHSFARIFYRNAFNMGLLLLEVGDEVDKIADGDTVEVDAAK 124
Query: 127 GEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKKKMA 165
G I N TTG + LP M E+L+ GGL+PY+++K+A
Sbjct: 125 GLITNRTTGATITCPPLPASMRELLDKGGLVPYVREKLA 163
Lambda K H
0.317 0.139 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 163
Length adjustment: 18
Effective length of query: 150
Effective length of database: 145
Effective search space: 21750
Effective search space used: 21750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)
Align candidate 8501057 DvMF_1793 (3-isopropylmalate dehydratase, small subunit (RefSeq))
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)
../bin/blast/fastacmd -i /tmp/list.29800.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29800.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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