Alignments for a candidate for DAPtransferase in Desulfovibrio vulgaris Miyazaki F

Align LL-diaminopimelate aminotransferase (EC 2.6.1.83) (characterized)
to candidate 8499593 DvMF_0361 LL-diaminopimelate aminotransferase (RefSeq)

Query= BRENDA::O66630
         (387 letters)



>FitnessBrowser__Miya:8499593
          Length = 389

 Score =  472 bits (1215), Expect = e-138
 Identities = 236/386 (61%), Positives = 289/386 (74%), Gaps = 2/386 (0%)

Query: 2   FEFSDRLKVLPPYLFAELDRKKQEKIEQGVDVIDLGVGDPDMPTPKPIVEAAKKALENPE 61
           F+ +DRL  LPPYLFA +D+ K E   +GVD+I LG+GDPDMPTP  I+EA KKA+E P 
Sbjct: 4   FKLADRLATLPPYLFAGIDKVKAEVAARGVDIISLGIGDPDMPTPDFIIEAMKKAVERPA 63

Query: 62  NHKYPSYVGKYEFRKAVADWYKRRFDVDLDPNTEVITLIGSKEGIAHFPLAFVNPGDIVL 121
           NH+YPSYVG  EFR+ VA+WY RRF V LDP TEVI LIGSKEGIAHFPLAFVNPGD+VL
Sbjct: 64  NHQYPSYVGMLEFRQEVANWYGRRFGVSLDPKTEVIGLIGSKEGIAHFPLAFVNPGDLVL 123

Query: 122 CPDPAYPVYRIGAIFAGGTPYTVPLKEENNFLPDLDSIPEDVAKKAKIIWINYPNNPTSA 181
              P YPVY I   F GG    +PL EEN++LPDLD+IP     +AK+I++NYPNNPT+A
Sbjct: 124 VCTPNYPVYHIATGFVGGEVQFIPLVEENDYLPDLDAIPAATWDRAKMIFVNYPNNPTAA 183

Query: 182 PPTLEFYKKLVDWAKEYNVIIASDNAYSEIYTGQ-EKPPSILQVPGAKDVAIEFHSLSKT 240
                FY+KL+   +++NVIIA D AY+E+Y  + +KP SIL+V GAKDV IEFHSLSKT
Sbjct: 184 TAPRAFYEKLIGICRKHNVIIAHDTAYTEVYYDENDKPMSILEVEGAKDVTIEFHSLSKT 243

Query: 241 YNMTGWRIGMAVGNKELVAGLGKVKTNVDSGQFGAVQDAGIVALNLPEEEVEKIRDVYRE 300
           YNMTGWR+GMAVGN  LVAGLGKVK NVDSG F AVQ+A IVAL   ++   ++R +YR+
Sbjct: 244 YNMTGWRVGMAVGNASLVAGLGKVKENVDSGIFQAVQEASIVALRDGDDFCRELRGIYRK 303

Query: 301 RKKIMTEALEKIGLEIYRSDYTFYLWIKVPEGY-TSAEFVGRLIDEAGIVCTPGNGFGEY 359
           R+ ++  AL K+G+        FY+W KVP GY +SAEFV  ++++ G+V TPGNGFG  
Sbjct: 304 RRDVVVAALNKVGIACRVPTAAFYIWAKVPAGYGSSAEFVTAVLEKTGVVLTPGNGFGTP 363

Query: 360 GEGYFRISLTVPTERLLEAAERIKNL 385
           GEGYFRISLTV T+RL EA  RI NL
Sbjct: 364 GEGYFRISLTVDTDRLEEAVSRIANL 389


Lambda     K      H
   0.317    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 506
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 389
Length adjustment: 30
Effective length of query: 357
Effective length of database: 359
Effective search space:   128163
Effective search space used:   128163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate 8499593 DvMF_0361 (LL-diaminopimelate aminotransferase (RefSeq))
to HMM TIGR03540 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))

Software error:

../bin/blast/fastacmd -i /tmp/list.11532.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11532.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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