Alignments for a candidate for asd in Desulfovibrio vulgaris Miyazaki F

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate 8501664 DvMF_2382 aspartate-semialdehyde dehydrogenase (RefSeq)

Query= metacyc::MONOMER-6564
         (346 letters)



>FitnessBrowser__Miya:8501664
          Length = 349

 Score =  366 bits (939), Expect = e-106
 Identities = 191/342 (55%), Positives = 248/342 (72%), Gaps = 8/342 (2%)

Query: 5   LHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESF 64
           L VAV GATGAVG++ML TLE R F    +   +S RSAG KV F G ELTV+E + ESF
Sbjct: 6   LVVAVCGATGAVGREMLNTLEQREFPAAEVIPFASARSAGNKVPFMGGELTVRELTEESF 65

Query: 65  EGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNGI 124
            GV+IALFSAGGS S+  AP AV+ G +V+DN+SA+RMDE  PLVVPEVN   L  HNGI
Sbjct: 66  RGVDIALFSAGGSTSEKFAPHAVQAGCVVVDNSSAWRMDERCPLVVPEVNAHALAAHNGI 125

Query: 125 IANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIE 184
           IANPNCSTIQMV AL+P+  A  + +V+VSTYQAVSG G +A+ EL  Q + + N +E +
Sbjct: 126 IANPNCSTIQMVVALKPLHDAARITRVVVSTYQAVSGTGQKAIDELEKQVRQMFNMQEPD 185

Query: 185 PEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVRL 244
             + P       ++IAFN +PQID F DN YT EEMKM+ ET KIM  P ++V ATCVR+
Sbjct: 186 VAVYP-------HRIAFNCLPQIDVFMDNDYTKEEMKMVLETVKIMEDPSVKVTATCVRV 238

Query: 245 PIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFVG 304
           P+  GHSESV IE +R   + ++ + +L +APGV + D+P+Q++YPMP DA G++D FVG
Sbjct: 239 PVFYGHSESVNIETER-KLSAKEARAILAQAPGVRVYDNPAQKMYPMPIDAAGEDDTFVG 297

Query: 305 RIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346
           RIR+D   ANG ++W+VSDN+ KGAA N+VQIAE+L + +L+
Sbjct: 298 RIREDETIANGLNMWIVSDNIRKGAALNAVQIAEALVERDLL 339


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 308
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 349
Length adjustment: 29
Effective length of query: 317
Effective length of database: 320
Effective search space:   101440
Effective search space used:   101440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate 8501664 DvMF_2382 (aspartate-semialdehyde dehydrogenase (RefSeq))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.7902.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7902.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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