Align ATP-dependent reduction of co(II)balamin (RamA-like) (characterized)
to candidate 8500650 DvMF_1398 iron-sulfur cluster-binding protein, putative (RefSeq)
Query= reanno::Miya:8500650
(685 letters)
>FitnessBrowser__Miya:8500650
Length = 685
Score = 1365 bits (3532), Expect = 0.0
Identities = 685/685 (100%), Positives = 685/685 (100%)
Query: 1 MSPHSSSEQPPCPAGNDTGCATARPEGRSGPVTPATPDRPGCPSTPGTQPASGAAAEVTL 60
MSPHSSSEQPPCPAGNDTGCATARPEGRSGPVTPATPDRPGCPSTPGTQPASGAAAEVTL
Sbjct: 1 MSPHSSSEQPPCPAGNDTGCATARPEGRSGPVTPATPDRPGCPSTPGTQPASGAAAEVTL 60
Query: 61 PDGRILHLPLSQSVSLSGQAAAGAAPASTLAQLVWMSGQVDPPALCSGLGRCGRCAARFT 120
PDGRILHLPLSQSVSLSGQAAAGAAPASTLAQLVWMSGQVDPPALCSGLGRCGRCAARFT
Sbjct: 61 PDGRILHLPLSQSVSLSGQAAAGAAPASTLAQLVWMSGQVDPPALCSGLGRCGRCAARFT 120
Query: 121 RGTPAPHPAEEAHFSPAELADGWRLLCRHALPAPASRSPSSPQGTDPNGNAASPPDARCT 180
RGTPAPHPAEEAHFSPAELADGWRLLCRHALPAPASRSPSSPQGTDPNGNAASPPDARCT
Sbjct: 121 RGTPAPHPAEEAHFSPAELADGWRLLCRHALPAPASRSPSSPQGTDPNGNAASPPDARCT 180
Query: 181 MAFTLPAGSAPRRFRAADAPLPDAIQASATGTSPATYTSPATGTSPATGTSPATGAPLLL 240
MAFTLPAGSAPRRFRAADAPLPDAIQASATGTSPATYTSPATGTSPATGTSPATGAPLLL
Sbjct: 181 MAFTLPAGSAPRRFRAADAPLPDAIQASATGTSPATYTSPATGTSPATGTSPATGAPLLL 240
Query: 241 AIDLGTTTLHWSALTPDGRRVAHGAELNPQMGAGSEVMSRLAVASSPQGLAALRRLTLAA 300
AIDLGTTTLHWSALTPDGRRVAHGAELNPQMGAGSEVMSRLAVASSPQGLAALRRLTLAA
Sbjct: 241 AIDLGTTTLHWSALTPDGRRVAHGAELNPQMGAGSEVMSRLAVASSPQGLAALRRLTLAA 300
Query: 301 VARIAAGLPGPVRGLCVAGNSAMTAILLGHDVSGLATAPYRLDYAGGTAEILPELADVTY 360
VARIAAGLPGPVRGLCVAGNSAMTAILLGHDVSGLATAPYRLDYAGGTAEILPELADVTY
Sbjct: 301 VARIAAGLPGPVRGLCVAGNSAMTAILLGHDVSGLATAPYRLDYAGGTAEILPELADVTY 360
Query: 361 RAGLPDLPDSPGRAAVPEVWIPPQPAPFVGGDVGAGMAALLYGGLVSGGGAGVAANTLQA 420
RAGLPDLPDSPGRAAVPEVWIPPQPAPFVGGDVGAGMAALLYGGLVSGGGAGVAANTLQA
Sbjct: 361 RAGLPDLPDSPGRAAVPEVWIPPQPAPFVGGDVGAGMAALLYGGLVSGGGAGVAANTLQA 420
Query: 421 AATAPAPAASPRFPFLLADLGTNGEFVLATGPDSALVTSVALGPALEGIGLSCGGVAQPG 480
AATAPAPAASPRFPFLLADLGTNGEFVLATGPDSALVTSVALGPALEGIGLSCGGVAQPG
Sbjct: 421 AATAPAPAASPRFPFLLADLGTNGEFVLATGPDSALVTSVALGPALEGIGLSCGGVAQPG 480
Query: 481 AIAAFTLGPAGLAPTVLPEDDGAPAAPTHLCGTGYLSLLRVLLRAGLLDEDGRFVMEPHS 540
AIAAFTLGPAGLAPTVLPEDDGAPAAPTHLCGTGYLSLLRVLLRAGLLDEDGRFVMEPHS
Sbjct: 481 AIAAFTLGPAGLAPTVLPEDDGAPAAPTHLCGTGYLSLLRVLLRAGLLDEDGRFVMEPHS 540
Query: 541 PLARRLAASLVEVRGERRLPLPGGLHLSAGDVEEVLKVKAAFSLAYERLLAEAGMSGTAL 600
PLARRLAASLVEVRGERRLPLPGGLHLSAGDVEEVLKVKAAFSLAYERLLAEAGMSGTAL
Sbjct: 541 PLARRLAASLVEVRGERRLPLPGGLHLSAGDVEEVLKVKAAFSLAYERLLAEAGMSGTAL 600
Query: 601 DAVYLAGALGEHARPDDLETLGFLPAGVAGRTRAVGNASLRGAELLLLQPELRARINAWR 660
DAVYLAGALGEHARPDDLETLGFLPAGVAGRTRAVGNASLRGAELLLLQPELRARINAWR
Sbjct: 601 DAVYLAGALGEHARPDDLETLGFLPAGVAGRTRAVGNASLRGAELLLLQPELRARINAWR 660
Query: 661 TGCRVVDLTTASDFSAAFLRHMRFR 685
TGCRVVDLTTASDFSAAFLRHMRFR
Sbjct: 661 TGCRVVDLTTASDFSAAFLRHMRFR 685
Lambda K H
0.316 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2461
Number of extensions: 177
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 685
Length adjustment: 39
Effective length of query: 646
Effective length of database: 646
Effective search space: 417316
Effective search space used: 417316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Align candidate 8500650 DvMF_1398 (iron-sulfur cluster-binding protein, putative (RefSeq))
to HMM PF14574 (RACo_C_ter)
../bin/blast/fastacmd -i /tmp/list.8377.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8377.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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