Alignments for a candidate for proA in Desulfovibrio vulgaris Miyazaki F

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate 8499847 DvMF_0612 gamma-glutamyl phosphate reductase (RefSeq)

Query= SwissProt::P07004
         (417 letters)



>FitnessBrowser__Miya:8499847
          Length = 436

 Score =  356 bits (914), Expect = e-103
 Identities = 194/416 (46%), Positives = 265/416 (63%), Gaps = 3/416 (0%)

Query: 1   MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSE 60
           ++E MG  AK A+ KLA  S   K   L ++A  LE++   IL ANA+D+A A A G+  
Sbjct: 23  LVESMGKRAKAAARKLAAASPAAKIDALVRLAGLLESREADILAANARDLAAAEAAGMDT 82

Query: 61  AMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYE 120
             +DRL LTP  +  +A   R V  L DPVG V       +GL + R R+PLGVI +IYE
Sbjct: 83  PRMDRLRLTPRIMAEMAAACRHVAGLPDPVGAVETQWQRPNGLLVGRMRIPLGVIAIIYE 142

Query: 121 ARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPD 180
           +RPNVT+D A LCLK GNAVILRGG E   +N A   +I +A+ + GLP  AVQ +   D
Sbjct: 143 SRPNVTIDSAILCLKAGNAVILRGGSEAIHSNLALAGLIAEAMSASGLPDDAVQVVSRTD 202

Query: 181 RALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALK 240
           RA V  +  +++YID++IPRGG  L +   +Q+T+PV+    GVCH YVD   ++ +A++
Sbjct: 203 RAAVGALCALEQYIDVIIPRGGETLIRAVVQQATMPVLKHYKGVCHAYVDAGADLDQAVE 262

Query: 241 VIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAK 300
           ++ N K QRP  CN +E LLV+K+ A + LPA++ ++A +GVT  A   AL  L  G A 
Sbjct: 263 IVFNGKVQRPGVCNALECLLVHKDEAAALLPAVAARLAPAGVTFRACPTALPLL--GDA- 319

Query: 301 VVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVD 360
             A   E+Y  EF  L L V++V D+D+A+AHI  HG+ H++ I TRD   A RF+ E D
Sbjct: 320 ATAAAPEDYGMEFHDLILAVRVVDDMDEALAHIAAHGSNHTEIICTRDHGRAMRFLREAD 379

Query: 361 SSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIR 416
           +S V VNASTRF DGGQ GLGAE+ +ST KLH+ GPMG++ LTT K++  G   +R
Sbjct: 380 ASMVAVNASTRFNDGGQLGLGAEIGISTSKLHSYGPMGVQELTTTKFVVFGAGQVR 435


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 439
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 436
Length adjustment: 32
Effective length of query: 385
Effective length of database: 404
Effective search space:   155540
Effective search space used:   155540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 8499847 DvMF_0612 (gamma-glutamyl phosphate reductase (RefSeq))
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.30826.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30826.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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