Alignments for a candidate for proB in Desulfovibrio vulgaris Miyazaki F

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate 8500629 DvMF_1377 gamma-glutamyl kinase (RefSeq)

Query= BRENDA::P0A7B5
         (367 letters)



>FitnessBrowser__Miya:8500629
          Length = 395

 Score =  261 bits (668), Expect = 2e-74
 Identities = 150/369 (40%), Positives = 226/369 (61%), Gaps = 8/369 (2%)

Query: 1   MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
           ++D++ +VVK+G++VLT G   L+ A +  L  Q + +   G R+V+V+SGA+AAGR  L
Sbjct: 26  LADARCVVVKVGSAVLTNGEG-LDLAMVESLAGQLSAVQEGGRRVVLVSSGAVAAGRGVL 84

Query: 61  GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT 120
                 A +  +Q  +A+GQSRL+  +++ F+  G    Q+LLTR D++ R RFLNAR+T
Sbjct: 85  RSCCEIAGMPHRQAASAIGQSRLMHHYDEAFARCGRISAQVLLTRDDLKSRNRFLNARNT 144

Query: 121 LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR 180
             ALLD   +PV+NEND VA  ++K GDND L++L   +  AD  + +T   G++  +P+
Sbjct: 145 FAALLDWGAIPVVNENDTVAVHDLKFGDNDCLASLLLNIVEADLFVNMTSAGGVFAENPQ 204

Query: 181 SNPQA---ELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGS 237
            NP A     I DV+G+D  L  + G   S +GTGGM +KL +A  A + G+ T+I  G 
Sbjct: 205 DNPDACVMACIDDVHGLD--LNGLCGGKTS-VGTGGMYSKLLSARRAAQIGVPTLIVPGR 261

Query: 238 KPGVIGDVMEGISVGTLFHAQATPLENRKRWI-FGAPPAGEITVDEGATAAILERGSSLL 296
           +P V+  V  G ++GT   A A  +  RK W+ + + PAG +TVDEGA  A+L+ G SLL
Sbjct: 262 EPDVLARVFAGEAIGTWVRADARTVSRRKYWLAYQSDPAGTVTVDEGAARALLQGGKSLL 321

Query: 297 PKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGP 356
           P G+ +V G F  G ++R+   +G  I  G+S Y +  LRRI GH   E+ AILG  + P
Sbjct: 322 PGGVCAVEGGFGSGALVRVAAQDGTVIGVGLSNYAAAELRRIMGHKRHEVAAILGDAHYP 381

Query: 357 VAVHRDDMI 365
             +HRD+++
Sbjct: 382 EVIHRDNLL 390


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 382
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 395
Length adjustment: 30
Effective length of query: 337
Effective length of database: 365
Effective search space:   123005
Effective search space used:   123005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate 8500629 DvMF_1377 (gamma-glutamyl kinase (RefSeq))
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.3595.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3595.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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