Alignments for a candidate for proC in Desulfovibrio vulgaris Miyazaki F

Align pyrroline-5-carboxylate reductase (EC 1.5.1.2) (characterized)
to candidate 8502455 DvMF_3161 pyrroline-5-carboxylate reductase (RefSeq)

Query= reanno::Miya:8502455
         (269 letters)



>FitnessBrowser__Miya:8502455
          Length = 269

 Score =  522 bits (1344), Expect = e-153
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MGTVLGCIGCGNMGAAILRGLSGRQGLSLLGYNPTPAKVLALADAGVRAMPDAATLAAQA 60
           MGTVLGCIGCGNMGAAILRGLSGRQGLSLLGYNPTPAKVLALADAGVRAMPDAATLAAQA
Sbjct: 1   MGTVLGCIGCGNMGAAILRGLSGRQGLSLLGYNPTPAKVLALADAGVRAMPDAATLAAQA 60

Query: 61  DVVLLGVKPYLVPDVLRAIAPSLTPGKVVVSIASGVSIAAMKAAIAEAGGPECPVVRVMP 120
           DVVLLGVKPYLVPDVLRAIAPSLTPGKVVVSIASGVSIAAMKAAIAEAGGPECPVVRVMP
Sbjct: 61  DVVLLGVKPYLVPDVLRAIAPSLTPGKVVVSIASGVSIAAMKAAIAEAGGPECPVVRVMP 120

Query: 121 NTPAMVGKGVYALCFEDPALDVPRRDLVRGLFESIGTVIVLPEARFTAFTAVVGCGPAYV 180
           NTPAMVGKGVYALCFEDPALDVPRRDLVRGLFESIGTVIVLPEARFTAFTAVVGCGPAYV
Sbjct: 121 NTPAMVGKGVYALCFEDPALDVPRRDLVRGLFESIGTVIVLPEARFTAFTAVVGCGPAYV 180

Query: 181 FYFMEAVTEVAVTLGFTRQDATELVKGLFSGSVALAEQSGTHLSVLREQVCSPAGNTIAA 240
           FYFMEAVTEVAVTLGFTRQDATELVKGLFSGSVALAEQSGTHLSVLREQVCSPAGNTIAA
Sbjct: 181 FYFMEAVTEVAVTLGFTRQDATELVKGLFSGSVALAEQSGTHLSVLREQVCSPAGNTIAA 240

Query: 241 MNQLDREAVRGRIMDAVLAAYRRGLEMEK 269
           MNQLDREAVRGRIMDAVLAAYRRGLEMEK
Sbjct: 241 MNQLDREAVRGRIMDAVLAAYRRGLEMEK 269


Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 269
Length adjustment: 25
Effective length of query: 244
Effective length of database: 244
Effective search space:    59536
Effective search space used:    59536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate 8502455 DvMF_3161 (pyrroline-5-carboxylate reductase (RefSeq))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.6601.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6601.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.