Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate 8501664 DvMF_2382 aspartate-semialdehyde dehydrogenase (RefSeq)
Query= metacyc::MONOMER-6564 (346 letters) >FitnessBrowser__Miya:8501664 Length = 349 Score = 366 bits (939), Expect = e-106 Identities = 191/342 (55%), Positives = 248/342 (72%), Gaps = 8/342 (2%) Query: 5 LHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESF 64 L VAV GATGAVG++ML TLE R F + +S RSAG KV F G ELTV+E + ESF Sbjct: 6 LVVAVCGATGAVGREMLNTLEQREFPAAEVIPFASARSAGNKVPFMGGELTVRELTEESF 65 Query: 65 EGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNGI 124 GV+IALFSAGGS S+ AP AV+ G +V+DN+SA+RMDE PLVVPEVN L HNGI Sbjct: 66 RGVDIALFSAGGSTSEKFAPHAVQAGCVVVDNSSAWRMDERCPLVVPEVNAHALAAHNGI 125 Query: 125 IANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIE 184 IANPNCSTIQMV AL+P+ A + +V+VSTYQAVSG G +A+ EL Q + + N +E + Sbjct: 126 IANPNCSTIQMVVALKPLHDAARITRVVVSTYQAVSGTGQKAIDELEKQVRQMFNMQEPD 185 Query: 185 PEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVRL 244 + P ++IAFN +PQID F DN YT EEMKM+ ET KIM P ++V ATCVR+ Sbjct: 186 VAVYP-------HRIAFNCLPQIDVFMDNDYTKEEMKMVLETVKIMEDPSVKVTATCVRV 238 Query: 245 PIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFVG 304 P+ GHSESV IE +R + ++ + +L +APGV + D+P+Q++YPMP DA G++D FVG Sbjct: 239 PVFYGHSESVNIETER-KLSAKEARAILAQAPGVRVYDNPAQKMYPMPIDAAGEDDTFVG 297 Query: 305 RIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346 RIR+D ANG ++W+VSDN+ KGAA N+VQIAE+L + +L+ Sbjct: 298 RIREDETIANGLNMWIVSDNIRKGAALNAVQIAEALVERDLL 339 Lambda K H 0.314 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 308 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 346 Length of database: 349 Length adjustment: 29 Effective length of query: 317 Effective length of database: 320 Effective search space: 101440 Effective search space used: 101440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 49 (23.5 bits)
Align candidate 8501664 DvMF_2382 (aspartate-semialdehyde dehydrogenase (RefSeq))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.12475.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12475.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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