Alignments for a candidate for trpD_2 in Desulfovibrio vulgaris Miyazaki F

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate 8501007 DvMF_1744 anthranilate phosphoribosyltransferase (RefSeq)

Query= SwissProt::Q8PD71
         (345 letters)



>FitnessBrowser__Miya:8501007
          Length = 338

 Score =  210 bits (535), Expect = 4e-59
 Identities = 131/312 (41%), Positives = 177/312 (56%), Gaps = 9/312 (2%)

Query: 29  QIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTD-RRHMVDIVGTGG 87
           ++M GE++ A   + L GLR+K ET  E+  A  V    +R V VT      +DIVGTGG
Sbjct: 29  RLMDGEMTCAQAGSFLMGLRMKGETPQELTEA--VRAALARAVRVTGIDGPTIDIVGTGG 86

Query: 88  DGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVAASLA 147
           DG  +FN ST      A  G +V KHGNR+VSS  G+ADA+E LG  +EL PE V A +A
Sbjct: 87  DGRSSFNCSTATALTLAGMGHRVVKHGNRAVSSSCGAADAVEGLGLPLELDPEDVRALVA 146

Query: 148 QTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGVFHPDLVGIQ 207
           Q    F++AP  HPA + V P+RRE+GVRT+FN+LGPL NPA   ++L+GV   +L+ + 
Sbjct: 147 QRNFAFLFAPRFHPAFRNVMPIRRELGVRTLFNLLGPLLNPARPSHMLLGVARAELLPLM 206

Query: 208 ARVLQELGAERALVVWGRDGMDELS-LGAGTLVGELRDGQVH----EYEVHPEDFGIAMS 262
           AR L   G  RA VV G  G DEL+ +G   ++    DGQ H    E  V P D+GIA  
Sbjct: 207 ARTLLLTGVRRAAVVHGAGGYDELTPMGPAHIMLLEGDGQGHGTLTEISVDPADYGIASC 266

Query: 263 ASRNLKVADAAESRAMLLQVLD-NVPGPALDIVALNAGAALYVAGVADSIADGIVRARQV 321
               L V D   +  +L ++L    P P  D++ LN G AL++     ++ D +  AR  
Sbjct: 267 TPEELAVPDRDTAVRVLRELLSGGGPAPMRDMLMLNVGMALHLLEPGLALPDAMAAARLA 326

Query: 322 LADGSARACLDA 333
           LA G+    L A
Sbjct: 327 LAAGAGGKVLHA 338


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 333
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 338
Length adjustment: 29
Effective length of query: 316
Effective length of database: 309
Effective search space:    97644
Effective search space used:    97644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 8501007 DvMF_1744 (anthranilate phosphoribosyltransferase (RefSeq))
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.25707.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25707.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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