Alignments for a candidate for ilvE in Desulfovibrio vulgaris Miyazaki F

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate 8501549 DvMF_2268 branched-chain amino acid aminotransferase (RefSeq)

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>FitnessBrowser__Miya:8501549
          Length = 307

 Score =  357 bits (915), Expect = e-103
 Identities = 170/302 (56%), Positives = 219/302 (72%)

Query: 3   MADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKR 62
           M  +   IW DGK + W +A +HVLTHTLHYG+GVFEG+RAYK ADGG+A+FRL+EH +R
Sbjct: 1   MVQKAETIWFDGKQVPWDEANVHVLTHTLHYGVGVFEGIRAYKCADGGSAVFRLREHMQR 60

Query: 63  LLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVA 122
           LLNSAKI +M +P+  + L  A  E ++ NKL   Y+RP+ +VG+  +GV    N +   
Sbjct: 61  LLNSAKILRMVIPYTVDQLVDAVEETLKRNKLAEGYIRPLSFVGAGAMGVYPGDNPVQTI 120

Query: 123 IAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYD 182
           IA WPWGAYLG + +  GIRVKTSSF RHHVN  M +AKA G YVNS+LA  EA ADGYD
Sbjct: 121 IATWPWGAYLGAEALEHGIRVKTSSFCRHHVNAMMTKAKACGNYVNSVLAKMEAKADGYD 180

Query: 183 EALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRI 242
           E L+LD  G+VSE +GEN F+V    + T  L+S LDGITR+++ITLAR+ G +V+E++ 
Sbjct: 181 EGLMLDTQGFVSEATGENIFIVRGKLIKTTPLTSVLDGITRNSLITLARELGYEVVEQQF 240

Query: 243 TRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKYAN 302
           TRDE+Y  DEAFF GTAAE+TPIRE+D R IG G  GP+T+ LQ  +F  V G++  YA+
Sbjct: 241 TRDELYIADEAFFCGTAAELTPIREVDLRVIGQGTAGPVTKHLQGEYFKAVKGENPAYAH 300

Query: 303 WL 304
           WL
Sbjct: 301 WL 302


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 334
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 307
Length adjustment: 27
Effective length of query: 280
Effective length of database: 280
Effective search space:    78400
Effective search space used:    78400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate 8501549 DvMF_2268 (branched-chain amino acid aminotransferase (RefSeq))
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.32673.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32673.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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