Alignments for a candidate for argE in Phaeobacter inhibens BS107

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate GFF997 PGA1_c10140 acetylornithine deacetylase ArgE

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__Phaeo:GFF997
          Length = 388

 Score =  218 bits (554), Expect = 3e-61
 Identities = 134/374 (35%), Positives = 191/374 (51%), Gaps = 10/374 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGD-RSNIFATIGPKEARG 63
           EI+ KL+ F +V    N  +V W+ GYL SHGI       P+   ++ +FA +GP     
Sbjct: 9   EIMTKLISFPTVSSETNLPLVDWVEGYLASHGITAHRWVDPDQPHKAAVFAHVGPDVEGA 68

Query: 64  YIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRR 123
            ++SGH DVVP     W SDPF +     + +GRGT DMKGF A  + A+       + R
Sbjct: 69  VVLSGHTDVVPIEGQPWDSDPFTVVERDGKYFGRGTCDMKGFDALAIWALVAAHHRGVAR 128

Query: 124 PLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRG 183
           PL LALS+DEE GC G P MI  + ++  +    I+GEP+ MR +  HKG       + G
Sbjct: 129 PLQLALSFDEEVGCTGAPPMIVAMQDVLPKGSCVIVGEPSVMRPVTGHKGGIGYSTHLVG 188

Query: 184 RSGHSSRPDQGLNAIHGVAGVLTQAVA-EADRLVGGPFE--HVFEPPYSSLQIGTVKGGQ 240
              HSS    G++AI   A ++  A A  A+ +   P +   +F PP+++  +G + GG 
Sbjct: 189 FEVHSSLMHTGVSAIMQGARLIDWANARNAENMAKTPDDVAALFTPPFTTCHVGMINGGT 248

Query: 241 AVNIIPDSCEVEFEARAISGVDPAE----LLAPVRKTAEALTTL--GFEVEWQELSAYPA 294
           A NI    C    + R + G   AE     LA VR     +  +     ++  +    P 
Sbjct: 249 AHNITAKDCRFVMDFRVVPGESAAEWEAAYLAKVRDIEAEMQVVHPDTRIDVSKKFNVPG 308

Query: 295 LSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYIL 354
           L  E +     L+  LTG      VSYGTEAG FQ AG  A+ICGPGDI +AH+P+EYI 
Sbjct: 309 LVPEVEGEAETLVRALTGDNGTHVVSYGTEAGQFQEAGYSAVICGPGDIAQAHQPNEYID 368

Query: 355 IDELMACRAMVEAL 368
           + +  A    ++ L
Sbjct: 369 VSQFNAGHRFMQQL 382


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 426
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 388
Length adjustment: 30
Effective length of query: 344
Effective length of database: 358
Effective search space:   123152
Effective search space used:   123152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate GFF997 PGA1_c10140 (acetylornithine deacetylase ArgE)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.17306.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17306.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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