Alignments for a candidate for argI in Phaeobacter inhibens BS107

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate GFF2391 PGA1_c24220 ornithine carbamoyltransferase ArgF

Query= BRENDA::Q98BB6
         (303 letters)



>FitnessBrowser__Phaeo:GFF2391
          Length = 308

 Score =  343 bits (879), Expect = 4e-99
 Identities = 174/308 (56%), Positives = 221/308 (71%), Gaps = 7/308 (2%)

Query: 3   VRHFTDLSTVSEGDLRFMLDDA-VVRKARL----KAGERTRPLEGKVLAMIFDKPSTRTR 57
           + HF D+      DLR ++D A   ++ARL     A +   PL+ +++A+IF+KPSTRTR
Sbjct: 1   MNHFLDIHKTDATDLRAIIDQASATKQARLGRPKAAPDDELPLKDRMVALIFEKPSTRTR 60

Query: 58  VSFDVGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTEN 117
           VSFDVG+RQ+GG+T++L+G +MQLG  ETIADTA+VLSRYVD IMIRT     L E+ E 
Sbjct: 61  VSFDVGVRQMGGQTMVLSGNDMQLGHGETIADTARVLSRYVDMIMIRTFDETVLTEMAEY 120

Query: 118 ATVPVINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFN 177
           A+VPVINGLTD THPCQ+MAD++T+EEHRGP+ GK + W GDGNNV  S L A+A+F F+
Sbjct: 121 ASVPVINGLTDRTHPCQIMADVLTYEEHRGPIKGKKVVWCGDGNNVCASFLHAAAQFGFD 180

Query: 178 LNVAVPEGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSM--GQEHRARG 235
           L    P   +P  + I  ++  G ++   R   +AV+ AD VV D WVSM   Q  + R 
Sbjct: 181 LTFTGPAQLDPEPEFIGLARNAGSQVIIERDAAKAVEGADLVVADTWVSMHDSQSSKERR 240

Query: 236 HNVFSPYQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKA 295
           HN+   YQVN  LMAHAKPDALFMHCLPAHR EEVT  V+DGP SV+FDEAENRLHAQKA
Sbjct: 241 HNMLRGYQVNDALMAHAKPDALFMHCLPAHREEEVTSAVMDGPQSVIFDEAENRLHAQKA 300

Query: 296 VLAWCLGA 303
           ++ +CLGA
Sbjct: 301 IMRYCLGA 308


Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 333
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 308
Length adjustment: 27
Effective length of query: 276
Effective length of database: 281
Effective search space:    77556
Effective search space used:    77556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate GFF2391 PGA1_c24220 (ornithine carbamoyltransferase ArgF)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.20909.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20909.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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