Alignments for a candidate for aroA in Phaeobacter inhibens BS107

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate GFF470 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA

Query= BRENDA::A6WUV8
         (450 letters)



>FitnessBrowser__Phaeo:GFF470
          Length = 449

 Score =  471 bits (1213), Expect = e-137
 Identities = 253/447 (56%), Positives = 315/447 (70%), Gaps = 3/447 (0%)

Query: 1   MSHSAPPKPATARRSEALTGEIRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTG 60
           MS    P P T+ R++ LTG   +PGDKSISHRS + G LA GET+I+GLLEGEDV++T 
Sbjct: 1   MSGHGTPIPMTSHRADPLTGIAEVPGDKSISHRSLILGALAVGETKISGLLEGEDVLDTA 60

Query: 61  RAMQAMGAK-IRKDGDAWIINGVGNGCLLQPEAALDFGNAGTGARLTMGLVGTYDMRTSF 119
           +AMQAMGA+ I   G  W ++GVG G L +PE  +D GN+GTG RL MG++ T  +  +F
Sbjct: 61  KAMQAMGAEVINHGGGNWSVHGVGVGGLAEPEQVIDCGNSGTGVRLIMGVMATSPITVTF 120

Query: 120 IGDASLSKRPMGRVLNPLREMGVQVEAAEGDRMPLTLIGPKTANPITYRVPMASAQVKSA 179
            GDASL+KRPM RV +PL   G Q     G R+P+T++G     P+ Y VP+ SAQVKSA
Sbjct: 121 TGDASLNKRPMARVTDPLALFGTQSVGRSGGRLPMTIVGAAEPTPVRYTVPVPSAQVKSA 180

Query: 180 VLLAGLNTPGVTTVIEPVMTRDHTEKMLQGFGADLSVETDKDGVRHIRITGQGKLIGQTI 239
           VLLAGLN PG T VIE   TRDH+E+ML GFGA+++VE D D  R I +TGQ +L  Q I
Sbjct: 181 VLLAGLNAPGQTVVIEKEATRDHSERMLAGFGAEITVE-DTDEGRVITLTGQPELKPQVI 239

Query: 240 DVPGDPSSTAFPLVAALLVEGSDVTIRNVLMNPTRTGLILTLQEMGADIEVLNARLAGGE 299
            VP DPSS AFP+ AAL+  GSDV +  + +NPTR GL  TLQ+MGAD+   N R  GGE
Sbjct: 240 AVPRDPSSAAFPVCAALITPGSDVLVPGIGLNPTRAGLFYTLQDMGADLTFENMREEGGE 299

Query: 300 DVADLRVKAS-KLKGVVVPPERAPSMIDEYPVLAIAAAFAEGETVMDGLDELRVKESDRL 358
            VADLR + S  +KG+ VPPERA SMIDEYPVL++ A+FA G+T+M G+ ELRVKESDR+
Sbjct: 300 PVADLRARYSPDMKGIDVPPERAASMIDEYPVLSVVASFATGKTMMTGVKELRVKESDRI 359

Query: 359 AAVARGLEANGVDCTEGEMSLTVRGRPDGKGLGGGTVATHLDHRIAMSFLVMGLASEKPV 418
            A+ARGL ANGV   EG+    V G       GGGT  + LDHRIAMSF+VMG+ ++KPV
Sbjct: 360 DAMARGLRANGVMVEEGDDWWAVTGLGPEGVPGGGTCESFLDHRIAMSFMVMGMGAQKPV 419

Query: 419 TVDDSTMIATSFPEFMDMMPGLGAKIE 445
           TVDD T IATSFP F  +M  LGA++E
Sbjct: 420 TVDDGTPIATSFPIFTPLMTTLGARLE 446


Lambda     K      H
   0.316    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 704
Number of extensions: 41
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 449
Length adjustment: 33
Effective length of query: 417
Effective length of database: 416
Effective search space:   173472
Effective search space used:   173472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate GFF470 PGA1_c04810 (3-phosphoshikimate 1-carboxyvinyltransferase AroA)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.25978.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25978.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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