Alignments for a candidate for aroC in Phaeobacter inhibens BS107

Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate GFF3353 PGA1_c34060 chorismate synthase AroC

Query= SwissProt::P12008
         (361 letters)



>FitnessBrowser__Phaeo:GFF3353
          Length = 368

 Score =  409 bits (1052), Expect = e-119
 Identities = 208/358 (58%), Positives = 265/358 (74%), Gaps = 8/358 (2%)

Query: 1   MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60
           M+ N+ G LFRVTT+GESHG ALG  VDG PP +P+    LQ  LD+RRPG ++  TQR 
Sbjct: 1   MSINSFGHLFRVTTWGESHGPALGATVDGCPPNVPVDAEMLQQWLDKRRPGQNKNMTQRN 60

Query: 61  EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120
           EPD VKILSGVFEG +TGT I L+IENTDQRS+DY  I   FRPGHAD TY QKYG RDY
Sbjct: 61  EPDAVKILSGVFEGKSTGTPIQLMIENTDQRSKDYGDIAQTFRPGHADITYFQKYGNRDY 120

Query: 121 RGGGRSSARETAMRVAAGAIAKKYL-AEKFGIEIRGCLTQMGDIPLDIK--DWSQVEQNP 177
           RGGGRSSARETA RVAAG +A++ + A   G+EI+G +T+MG++ +D    DW  ++QN 
Sbjct: 121 RGGGRSSARETAARVAAGGVAREAIKALVPGLEIKGYMTRMGEMEIDRSRFDWDAIDQND 180

Query: 178 FFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSI 237
           F+ PD   +   +  ++ L+KE DS+GA + VVA GVPAG+G P++ +LD D+A A+MSI
Sbjct: 181 FWIPDAAAVQDWENYLQGLRKEHDSVGAVIEVVARGVPAGIGAPIYGKLDTDLASAMMSI 240

Query: 238 NAVKGVEIGDGFDVVALRGSQNRDEI--TKDG---FQSNHAGGILGGISSGQQIIAHMAL 292
           NAVK VEIG+G +   L+GS+N DEI   +DG   + SNH+GGILGGIS+GQ ++   A+
Sbjct: 241 NAVKAVEIGEGMNAALLKGSENADEIFLGEDGQPVYSSNHSGGILGGISTGQDVVVRFAV 300

Query: 293 KPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQ 350
           KPTSSI  P ++I + G   E+ITKGRHDPCVGIRAVP+AEAM+A V++DHLL  R Q
Sbjct: 301 KPTSSILTPRQSIRKDGSAAEVITKGRHDPCVGIRAVPVAEAMMACVILDHLLLHRGQ 358


Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 433
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 368
Length adjustment: 29
Effective length of query: 332
Effective length of database: 339
Effective search space:   112548
Effective search space used:   112548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate GFF3353 PGA1_c34060 (chorismate synthase AroC)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.6904.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6904.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.