Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate GFF1541 PGA1_c15600 3-dehydroquinate dehydratase AroQ
Query= BRENDA::N1V364
(155 letters)
>FitnessBrowser__Phaeo:GFF1541
Length = 149
Score = 169 bits (429), Expect = 1e-47
Identities = 79/140 (56%), Positives = 101/140 (72%)
Query: 16 LLVLNGPNLNLLGTREPQIYGSDTLEDAETLAARAAEAHGLAVECLQSNHEGVLIDAIHA 75
+LVLNGPNLNLLGTR+P++YG +TL E + GL+V C QSNHEG L+DA+H
Sbjct: 4 ILVLNGPNLNLLGTRQPEVYGRETLAMVEQRCVEHGHSIGLSVRCEQSNHEGALLDALHG 63
Query: 76 ARGTAAGIVINPGGYTHTSVALRDALSGVDLPVVEVHISNIHRREEFRHHSYISGIAVAV 135
ARG AG+++N G YTHTS+AL DA+ ++LPVVEVH+SNIH RE+FRH SY+S A+
Sbjct: 64 ARGVYAGVILNAGAYTHTSIALMDAIFSIELPVVEVHLSNIHAREDFRHRSYLSRAALGQ 123
Query: 136 IAGAGISGYKFAVDLLASRL 155
I G G GY A+D L + L
Sbjct: 124 ICGFGAQGYIMALDALRAHL 143
Lambda K H
0.317 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 149
Length adjustment: 17
Effective length of query: 138
Effective length of database: 132
Effective search space: 18216
Effective search space used: 18216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)
Align candidate GFF1541 PGA1_c15600 (3-dehydroquinate dehydratase AroQ)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.5180.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5180.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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