Alignments for a candidate for aroE in Phaeobacter inhibens BS107

Align shikimate dehydrogenase (EC 1.1.1.25) (characterized)
to candidate GFF3462 PGA1_c35150 shikimate dehydrogenase AroE

Query= reanno::Caulo:CCNA_00003
         (285 letters)



>FitnessBrowser__Phaeo:GFF3462
          Length = 277

 Score =  197 bits (502), Expect = 2e-55
 Identities = 108/269 (40%), Positives = 148/269 (55%)

Query: 11  VGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVRGLNVTI 70
           + GV G P+ HS SP++H  W+   G+   YVP      + E  V  L      G N+TI
Sbjct: 8   LAGVIGSPVAHSRSPLVHGHWLRTYGIAGHYVPLHVEPGQLEEVVRSLPKMGFVGANITI 67

Query: 71  PFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTAA 130
           P KE+ + +AD  +D A + GAAN L+F  DGS+ ADNTDG G +  +   AP +D    
Sbjct: 68  PHKEQIMEIADQVTDRATLIGAANTLIFRPDGSILADNTDGYGFITNLHQAAPDWDPATG 127

Query: 131 PVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALLP 190
           P V+ GAGGA+R  +A+LL AG P I + NRT  RA      FG ++       +  ++ 
Sbjct: 128 PAVVFGAGGASRAVIASLLEAGVPEILLSNRTRERADQFRSEFGSRIQVVDWVQVGNVIE 187

Query: 191 EAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGLE 250
           +A L++N TSLG+ G       L     + VV D+VY PL+T+ L+ AE  G  TVDGL 
Sbjct: 188 QAALLVNTTSLGMVGKPRLRVPLDGLRSSTVVTDLVYTPLKTDMLQWAEDIGCTTVDGLG 247

Query: 251 MLLRQAIPTFETIYGQAPSPKIDVRVLAL 279
           MLL QA+P FE  +G+ P      R  AL
Sbjct: 248 MLLHQAVPGFERWFGKRPEVDAATREAAL 276


Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 204
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 277
Length adjustment: 26
Effective length of query: 259
Effective length of database: 251
Effective search space:    65009
Effective search space used:    65009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate GFF3462 PGA1_c35150 (shikimate dehydrogenase AroE)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.18813.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18813.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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