Alignments for a candidate for cysE in Phaeobacter inhibens BS107

Align serine O-acetyltransferase (EC 2.3.1.30) (characterized)
to candidate GFF1745 PGA1_c17690 serine acetyltransferase CysE

Query= BRENDA::C4IRW0
         (281 letters)



>FitnessBrowser__Phaeo:GFF1745
          Length = 271

 Score =  297 bits (761), Expect = 1e-85
 Identities = 142/261 (54%), Positives = 189/261 (72%)

Query: 20  LDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILNQPSLEEAVMHRIAERLGHPDVSADI 79
           +  VDP+W  I  EA++A R  P++G  ++A IL+  SLE+A+ +RIA +L   ++S  I
Sbjct: 8   VSSVDPVWDQITTEAQDAVRRQPLMGGLIHACILHHTSLEKALSYRIAAKLCSNEMSMVI 67

Query: 80  LRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYK 139
           LR+  D     NP+     R D+ AVY+RDPA  R + P+LY KG+ A+Q +R+AHWL++
Sbjct: 68  LREIVDKAYGENPDLIAAGRADLMAVYERDPACHRLLQPILYFKGYQAVQAYRVAHWLWQ 127

Query: 140 QGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTL 199
           +G  D +Y+ Q R S IF  DIHPAA++G G+ +DHA  +V+GETAVV DNVS+LH VTL
Sbjct: 128 KGDYDLSYFFQMRISEIFGVDIHPAAKIGRGIMIDHAHSIVIGETAVVGDNVSMLHSVTL 187

Query: 200 GGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPAR 259
           GGTGK   DRHPKI  GVLIGAGAK+LGNI+VG CS+IAAGSVVL+ +P   TVAGVPA+
Sbjct: 188 GGTGKEEEDRHPKIGDGVLIGAGAKVLGNIKVGHCSRIAAGSVVLQEIPPCKTVAGVPAK 247

Query: 260 IIGETGCTEPSRVMDQMLGDG 280
           I+GE GC +PS  M+Q+LG G
Sbjct: 248 IVGEAGCDQPSVSMNQVLGGG 268


Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 282
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 271
Length adjustment: 25
Effective length of query: 256
Effective length of database: 246
Effective search space:    62976
Effective search space used:    62976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate GFF1745 PGA1_c17690 (serine acetyltransferase CysE)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.4372.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4372.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.