Alignments for a candidate for gatA in Phaeobacter inhibens BS107

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate GFF2165 PGA1_c21970 glutamyl-tRNA(Gln) amidotransferase subunit A

Query= SwissProt::O06491
         (485 letters)



>FitnessBrowser__Phaeo:GFF2165
          Length = 495

 Score =  452 bits (1164), Expect = e-132
 Identities = 243/481 (50%), Positives = 332/481 (69%), Gaps = 18/481 (3%)

Query: 8   ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67
           +++ +  + K E    +L +   K I A D  + AF+    E     A E  +A D R +
Sbjct: 9   LSDARDALRKGETTSVELTEACLKAIDAAD-ALNAFVHKTPE----IALERSKAADARIK 63

Query: 68  HG---LLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNM 124
            G    + G+PIG+KD   TKG+ +  +S ILE F P Y++TV Q+LQDA AV +GKLNM
Sbjct: 64  AGDAPAMCGLPIGIKDLFCTKGVASQAASGILEGFKPEYESTVSQQLQDAGAVMLGKLNM 123

Query: 125 DEFAMGSSTENSAYKLTKNPWN-----LDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSI 179
           DEFAMGSS E S Y    +PW       +  PGGSSGGSA+AVAA     + G+DTGGSI
Sbjct: 124 DEFAMGSSNETSVYGNAVSPWRRGNDTAELTPGGSSGGSASAVAADLCLAATGTDTGGSI 183

Query: 180 RQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDST 239
           RQPA+F G+ G+KPTYGR SR+G+VAFASSLDQ GP+T++V D A +L+A+ G D  DST
Sbjct: 184 RQPAAFTGITGIKPTYGRCSRWGVVAFASSLDQAGPMTKSVRDAAMMLEAMCGHDPKDST 243

Query: 240 SANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSL 299
           SA++ VP+F + LTGDIKG KI +P+EY  +G+  E  +      ++L   GA   ++SL
Sbjct: 244 SADLAVPNFEAMLTGDIKGKKIGIPREYRMDGMPAEIEKLWSEGAEMLRAAGAEIVDISL 303

Query: 300 PHSKYALATYYLLSSSEASANLARFDGIRYGYRT--DNADNLIDLYKQTRAEGFGNEVKR 357
           PH+KYAL  YY+++ +EAS+NLAR+DG+RYG R   +  D + ++Y++TRA GFG+EV+R
Sbjct: 304 PHTKYALPAYYVIAPAEASSNLARYDGVRYGQRATLEAGDGITEMYEKTRAAGFGHEVQR 363

Query: 358 RIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVF-EKYDVIVGPTTPTPAFKIGEN-T 415
           R+M+GT+ LS+G+YDAYY +A+KVRTLIKKDFEDVF +  D I+ P TP+ AF +GE   
Sbjct: 364 RVMVGTYVLSAGFYDAYYNRARKVRTLIKKDFEDVFAQGIDAILTPATPSAAFGLGEMID 423

Query: 416 KDPLTMYANDILTIPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQ 474
            DP+ MY ND+ T+ VNLAG+PGISVP G+ A GLPLGLQ+IG+ ++E  +   A+A E+
Sbjct: 424 ADPVQMYLNDVFTVTVNLAGLPGISVPAGIDAQGLPLGLQLIGRPWEEGDLLNTAYALEE 483

Query: 475 A 475
           A
Sbjct: 484 A 484


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 583
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 495
Length adjustment: 34
Effective length of query: 451
Effective length of database: 461
Effective search space:   207911
Effective search space used:   207911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate GFF2165 PGA1_c21970 (glutamyl-tRNA(Gln) amidotransferase subunit A)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.25965.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25965.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.