Alignments for a candidate for hisA in Phaeobacter inhibens BS107

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate GFF911 PGA1_c09270 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA

Query= reanno::Smeli:SMc02570
         (247 letters)



>FitnessBrowser__Phaeo:GFF911
          Length = 240

 Score =  288 bits (737), Expect = 7e-83
 Identities = 152/240 (63%), Positives = 183/240 (76%), Gaps = 1/240 (0%)

Query: 1   MILFPAIDLKDGQCVRLKLGDMEQATVYNPDPAAQARAFEEQGFEWLHVVDLNGAFAGET 60
           MIL+PAIDLKDGQ VRL  GDME+ TV+N DPAAQA  F E G +WLH+VDLNGAFAGE 
Sbjct: 1   MILYPAIDLKDGQAVRLLHGDMEKTTVFNDDPAAQALEFVEAGCDWLHLVDLNGAFAGEP 60

Query: 61  VNGAAVDAILKATKNPVQLGGGIRTLEHIENWLSRGLKRVILGTVAVRDPALVIEACRKF 120
           VN A V+ ILK  K P QLGGGIR +  IE W+ +GL RVILGTVAV +P LV EA R F
Sbjct: 61  VNAAPVEKILKRCKVPAQLGGGIRDMATIERWIDKGLARVILGTVAVENPDLVREAARAF 120

Query: 121 PGRVAVGIDAKGGKVAVEGWAEASELGVVELARKFEGAGVAAIIYTDIDRDGILTGINWA 180
           PG+VAVGIDA+ G+VA +GWAE +++ V +LA+ FE AGVAAIIYTDI RDG + G N  
Sbjct: 121 PGKVAVGIDARNGRVATKGWAEETDVMVTDLAKSFEDAGVAAIIYTDILRDGAMKGPNVE 180

Query: 181 STLELADAVSIPVIASGGLASMDDIRRMTEPDAQKLEGAISGRALYDGRIDPKEALDLIR 240
           +T  LA+AVSIPVIASGG++S+ D++ +    A  L GAISGRALYDG ID  EAL +++
Sbjct: 181 ATAALANAVSIPVIASGGVSSLADLQALKSCGA-PLNGAISGRALYDGAIDLGEALKILK 239


Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 257
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 240
Length adjustment: 23
Effective length of query: 224
Effective length of database: 217
Effective search space:    48608
Effective search space used:    48608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate GFF911 PGA1_c09270 (1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.16136.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16136.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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