Alignments for a candidate for hisD in Phaeobacter inhibens BS107

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (uncharacterized)
to candidate GFF761 PGA1_c07750 histidinol dehydrogenase HisD

Query= curated2:Q465R4
         (433 letters)



>FitnessBrowser__Phaeo:GFF761
          Length = 435

 Score =  267 bits (683), Expect = 4e-76
 Identities = 152/412 (36%), Positives = 238/412 (57%), Gaps = 9/412 (2%)

Query: 21  LSRGSGLEDVAKTVSTVLSDVRTKGDSALREYTAKFDKVELANFGVSEEEFQQALSGISP 80
           L+  S   +  KTV  +L D+   GD+   EY AKFD+ E  N  +++EE + A + +  
Sbjct: 11  LTPKSDASETHKTVQGILDDIEAGGDAKALEYAAKFDRYE-GNVLLTDEEIEAACALVPE 69

Query: 81  ELLDHLKSAAANIRAFHEAQLPKATWF---MELKPGIVLGQKATPLESVGAYAPGGRASY 137
           +L   ++ +  N+R F  A+L K+T      E+ PG + GQK  P+++ G Y PGGR S+
Sbjct: 70  KLKADIRFSHDNVRRF--AELQKSTMQNVETEICPGFITGQKVIPVDAAGCYVPGGRYSH 127

Query: 138 PSTVLMTVIPARVAGVEQVIVCTPPRPDGSVHPLTLAAAKVAGADKVFKLGGVQAIGSMA 197
            ++ +MTV  A+VAG + +  C+PPRP   V P  + AA + GADK+  +GGVQ + +M 
Sbjct: 128 IASAIMTVTTAKVAGCKHITACSPPRPGVGVAPAIVYAAHICGADKIMAMGGVQGVAAMT 187

Query: 198 YGTETVPKVDKIVGPGNVFVTAAKMQIRDVAEIDFPAGPSEVLIIADESADAVMVASDIL 257
           +G   +PK + +VGPGN FV  AK  +     ID  AGP++ LI+AD +ADA +VA+D++
Sbjct: 188 FGLFGLPKANILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLILADRTADAHIVATDLV 247

Query: 258 AQSEHDPNSVSILVTGSDTLAEAVKREV---LVQAEQAARSSIIKSSLENAAILIADSLE 314
           +Q+EH  NS   LVT    LAE V R V   +    +  R +   +  + A +++    E
Sbjct: 248 SQAEHGYNSPVWLVTDDRALAEEVMRLVPGLIDDLPEVNRENAAAAWRDYAEVILCSDRE 307

Query: 315 QCIGFSNKFAPEHLEIMVADPDFVLDRIKNAGSIFIGNYSPVPVGDYASGTNHVLPTSGY 374
           +    S+ +APEHL +   D D+ L ++   GS+F+G  + V  GD A+GTNHVLPTS  
Sbjct: 308 EMAACSDDYAPEHLTVQAEDLDWWLGQLTCYGSLFLGEETTVSYGDKAAGTNHVLPTSRA 367

Query: 375 ARVYSGLNINHFIKYSSIQRISKSGLESLKETVIALAEEEGLQAHADAIRTR 426
           A    GL+++ ++K  + QR ++ G +++ E    +A  EG++ HA A   R
Sbjct: 368 ASYTGGLSVHKYMKIVTWQRATREGSKAVAEATARIARLEGMEGHARAADVR 419


Lambda     K      H
   0.315    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 400
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 435
Length adjustment: 32
Effective length of query: 401
Effective length of database: 403
Effective search space:   161603
Effective search space used:   161603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate GFF761 PGA1_c07750 (histidinol dehydrogenase HisD)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.25295.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25295.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.