Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate GFF1423 PGA1_c14400 phosphoribosyl-AMP cyclohydrolase Hisl
Query= SwissProt::O26347
(138 letters)
>FitnessBrowser__Phaeo:GFF1423
Length = 125
Score = 118 bits (295), Expect = 4e-32
Identities = 58/116 (50%), Positives = 82/116 (70%), Gaps = 3/116 (2%)
Query: 12 LNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGE 71
L+ ++N G LI +AQ+ ++GEVLM+A+MN +A+ +TLE+G YWS SR W+KGE
Sbjct: 12 LSLKYNEAG--LIPCIAQEEDSGEVLMMAWMNADAVMKTLESGRVTYWSRSRQAFWIKGE 69
Query: 72 SSGHVQRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI-DGDELKVREDAV 126
SSGHVQ + D+ VDCD D ++ V Q G ACHT RSCFY +I DG+E+++ + V
Sbjct: 70 SSGHVQALVDLRVDCDRDCLLAVVRQSGPACHTNRRSCFYTAIRDGEEVELMQPMV 125
Lambda K H
0.318 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 125
Length adjustment: 14
Effective length of query: 124
Effective length of database: 111
Effective search space: 13764
Effective search space used: 13764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)
Align candidate GFF1423 PGA1_c14400 (phosphoribosyl-AMP cyclohydrolase Hisl)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.3122.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3122.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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