Alignments for a candidate for hisF in Phaeobacter inhibens BS107

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate GFF908 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF

Query= BRENDA::Q5NMD6
         (255 letters)



>FitnessBrowser__Phaeo:GFF908
          Length = 253

 Score =  343 bits (880), Expect = 2e-99
 Identities = 171/250 (68%), Positives = 206/250 (82%), Gaps = 1/250 (0%)

Query: 3   LCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGT 62
           L TRIIPCLDVADGRVVKGVNF  L DAGDPVE AK YDAAGADE+CFLDI A+HE RGT
Sbjct: 2   LKTRIIPCLDVADGRVVKGVNFVGLRDAGDPVEAAKAYDAAGADEICFLDIHATHENRGT 61

Query: 63  MLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFG 122
           M D+V RTAE CF+PLTVGGGVR  ED RALLLAGADKV+ NSAAVA P+++ E AD+FG
Sbjct: 62  MFDMVRRTAEQCFVPLTVGGGVRTKEDVRALLLAGADKVSFNSAAVANPDVIREAADQFG 121

Query: 123 AQCVVAAIDARRNG-DHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTRD 181
           +QC V AIDA+      WE++THGGRR TGI+A++ A  +   GAGEILLTSMD+DGT+ 
Sbjct: 122 SQCTVCAIDAKTVAPGKWEIFTHGGRRETGIDAVEFARLVVAKGAGEILLTSMDRDGTKS 181

Query: 182 GYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAHE 241
           G++L LTR ++D+V VPVIASGGVG LDH+VEGVT+G ASA+LAASIFHFG++++ EA +
Sbjct: 182 GFNLPLTRAISDAVDVPVIASGGVGTLDHLVEGVTEGGASAVLAASIFHFGEFTVQEAKQ 241

Query: 242 ALAKAGLTVR 251
            +A AG+ +R
Sbjct: 242 HMAAAGIPMR 251


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 294
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 253
Length adjustment: 24
Effective length of query: 231
Effective length of database: 229
Effective search space:    52899
Effective search space used:    52899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate GFF908 PGA1_c09240 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.25647.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25647.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.