Alignments for a candidate for hisG in Phaeobacter inhibens BS107

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate GFF2940 PGA1_c29870 ATP phosphoribosyltransferase HisG

Query= reanno::Phaeo:GFF2940
         (230 letters)



>FitnessBrowser__Phaeo:GFF2940
          Length = 230

 Score =  452 bits (1162), Expect = e-132
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MSLKLGVPSKGRLMEKTFEWFAKRGITLSRTGSDREYAGAVAGIDGIDLVLLSAGEMPRE 60
           MSLKLGVPSKGRLMEKTFEWFAKRGITLSRTGSDREYAGAVAGIDGIDLVLLSAGEMPRE
Sbjct: 1   MSLKLGVPSKGRLMEKTFEWFAKRGITLSRTGSDREYAGAVAGIDGIDLVLLSAGEMPRE 60

Query: 61  LAAGRIHLGVTGTDLVQEKLPLWEQQVEEIAGLGFGHADLILAVPQIWVDVETIDDLDAV 120
           LAAGRIHLGVTGTDLVQEKLPLWEQQVEEIAGLGFGHADLILAVPQIWVDVETIDDLDAV
Sbjct: 61  LAAGRIHLGVTGTDLVQEKLPLWEQQVEEIAGLGFGHADLILAVPQIWVDVETIDDLDAV 120

Query: 121 AAAFRAKHGHRLRIATKYHRLVREYLMDAGVADYQLVDSQGATEGTVKNETAEMVADITS 180
           AAAFRAKHGHRLRIATKYHRLVREYLMDAGVADYQLVDSQGATEGTVKNETAEMVADITS
Sbjct: 121 AAAFRAKHGHRLRIATKYHRLVREYLMDAGVADYQLVDSQGATEGTVKNETAEMVADITS 180

Query: 181 TGETLRANHLKLMSDGLILRSQATLWRSRVAKYSAKEKATLGDLLERLHG 230
           TGETLRANHLKLMSDGLILRSQATLWRSRVAKYSAKEKATLGDLLERLHG
Sbjct: 181 TGETLRANHLKLMSDGLILRSQATLWRSRVAKYSAKEKATLGDLLERLHG 230


Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 356
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 230
Length adjustment: 23
Effective length of query: 207
Effective length of database: 207
Effective search space:    42849
Effective search space used:    42849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate GFF2940 PGA1_c29870 (ATP phosphoribosyltransferase HisG)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.1820.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1820.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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