Alignments for a candidate for hisH in Phaeobacter inhibens BS107

Align imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) (characterized)
to candidate GFF916 PGA1_c09320 imidazole glycerol phosphate synthase subunit HisH

Query= BRENDA::Q5NMD4
         (213 letters)



>FitnessBrowser__Phaeo:GFF916
          Length = 212

 Score =  184 bits (468), Expect = 8e-52
 Identities = 96/211 (45%), Positives = 130/211 (61%), Gaps = 9/211 (4%)

Query: 10  ALIDYGAGNLRSVANALLASGLARE----NLVVTANPDEVLQADRVVLPGVGAFASCMQA 65
           A+IDY +GNL S   A     +ARE     ++VT++ D V +ADR+VLPG GAF +C + 
Sbjct: 4   AIIDYESGNLHSAEKAF--QRMAREVDGGEVMVTSDADVVARADRLVLPGDGAFPACAEE 61

Query: 66  LKAIPDMVPALEKAVLEKGRPFLGICVGMQLLADQGEEYGVHQGLGWIKGKVTPLRPNDP 125
           L+    +  A+ +AV + GRPFLGICVGMQL+A  G EY    GLGW++G V  + P+D 
Sbjct: 62  LRGHRGIYEAMVEAVEQNGRPFLGICVGMQLMATTGHEYRDTPGLGWVQGDVVKITPSDS 121

Query: 126 SCKVPHMGWNQIGLTTDS---HPLLRAGEAYFLHSYAFVPEDESTLLATTEHGGLVTAAV 182
           + KVPHMGWN + +  D      +      YF+HSY F   D +  LA  ++G  VTA +
Sbjct: 122 ALKVPHMGWNNLVIDHDHTIFDGITSGDHCYFVHSYHFRVNDPAERLAHVDYGSDVTAVI 181

Query: 183 GRDNIMGVQFHPEKSQSYGLEFLSRFLDWNP 213
           GRD ++G+QFHPEKSQ  GL  +  FL W P
Sbjct: 182 GRDTMVGMQFHPEKSQDIGLRMIGNFLTWTP 212


Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 155
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 212
Length adjustment: 21
Effective length of query: 192
Effective length of database: 191
Effective search space:    36672
Effective search space used:    36672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate GFF916 PGA1_c09320 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.16982.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16982.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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