Alignments for a candidate for prs in Phaeobacter inhibens BS107

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate GFF2473 PGA1_c25050 ribose-phosphate pyrophosphokinase Prs

Query= SwissProt::P0A1V6
         (315 letters)



>FitnessBrowser__Phaeo:GFF2473
          Length = 339

 Score =  314 bits (805), Expect = 2e-90
 Identities = 167/319 (52%), Positives = 222/319 (69%), Gaps = 11/319 (3%)

Query: 5   KLFAGNATPELAQRIANRLYTSLG------DAAVGRFSDGEVSVQINENVRGGDIFIIQS 58
           KL AGNA   LA+ I  R+    G      DA V RF+DGE+ V++ ENVRG D+FIIQ 
Sbjct: 8   KLIAGNANLPLAETITRRMSMHRGVDQGLVDARVERFNDGEIFVEVYENVRGEDMFIIQP 67

Query: 59  TCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLS 118
           T  P NDNLMEL+++ DALRR+SA RITAVIPYFGYARQDRR + AR PI+AK+VA+ L+
Sbjct: 68  TSNPANDNLMELLIIADALRRSSAQRITAVIPYFGYARQDRRTK-ARTPISAKLVANMLT 126

Query: 119 SVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDM---LQLNLDNPIVVSPDIGGVV 175
             G++RVLT+DLHA QIQGFFD+PVDN++ SPI   D+    + ++D  +VVSPD+GGV 
Sbjct: 127 GAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIFALDVKNQFKDSMDEIMVVSPDVGGVA 186

Query: 176 RARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEA 235
           RAR +AK +N   ++I+DKRR +A     M +IGDV  + C+++DDM DT GTLCKAA+ 
Sbjct: 187 RARELAKRIN-APLSIVDKRREKAGEVAEMTVIGDVTDKICLIIDDMCDTAGTLCKAAQV 245

Query: 236 LKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLTDEIKALPNVRTLTLSGM 295
           L + GAK V AY TH + SG A   + NSV+  +V+ DTI  TD +   PN+R L  + +
Sbjct: 246 LLDNGAKEVHAYITHGVMSGPAVERVTNSVMKSLVLTDTIQPTDAVLGAPNIRILPTAPL 305

Query: 296 LAEAIRRISNEESISAMFE 314
             +AI  I +  S+S++FE
Sbjct: 306 FTQAILNIWHGTSVSSLFE 324


Lambda     K      H
   0.322    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 305
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 339
Length adjustment: 28
Effective length of query: 287
Effective length of database: 311
Effective search space:    89257
Effective search space used:    89257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate GFF2473 PGA1_c25050 (ribose-phosphate pyrophosphokinase Prs)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.19344.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19344.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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