Alignments for a candidate for ilvC in Phaeobacter inhibens BS107

Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate GFF644 PGA1_c06580 ketol-acid reductoisomerase IlvC

Query= metacyc::MONOMER-18814
         (338 letters)



>FitnessBrowser__Phaeo:GFF644
          Length = 340

 Score =  460 bits (1183), Expect = e-134
 Identities = 228/340 (67%), Positives = 268/340 (78%), Gaps = 2/340 (0%)

Query: 1   MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGV-NVTVGLRKSGASWNKAANA 59
           M+V+YD+D D++LIK K V I+GYGSQGHAHALNL+DSG  N+ V LR+  AS  KA   
Sbjct: 1   MRVYYDRDCDVNLIKDKKVAILGYGSQGHAHALNLRDSGAKNLVVALREGSASAKKAEGE 60

Query: 60  GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119
           GLQV  +AEA    DV+M  +PDE  A+ YK  VHDNIK GAA+AFAHG NVH+G + P+
Sbjct: 61  GLQVMGIAEAAAWCDVIMFTMPDELQAETYKKYVHDNIKPGAAIAFAHGLNVHFGLIEPK 120

Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179
             +DVIM+APK PGHTVR  YT+GGGVP L+AV  + +G A +I LSY +A GGGR+GII
Sbjct: 121 EGVDVIMMAPKGPGHTVRGEYTKGGGVPCLVAVDTDATGKALEIGLSYCSAIGGGRSGII 180

Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239
           ETNFREE ETDLFGEQAVLCGG VELI+ GFETLVEAGYAPEMAYFECLHE KLIVDLIY
Sbjct: 181 ETNFREECETDLFGEQAVLCGGIVELIRCGFETLVEAGYAPEMAYFECLHETKLIVDLIY 240

Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVT-EETKKAMKQCLTDIQTGEYAKSFLLENKAGA 298
           EGGIANM+YSISN AEYG+YVTGPR++  E+TKKAMK  LTDIQ G++ + F+LEN  G 
Sbjct: 241 EGGIANMDYSISNTAEYGQYVTGPRILPYEQTKKAMKDVLTDIQQGKFVRDFMLENAVGQ 300

Query: 299 PTLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338
           PT+ + RR   EHQIE VG KLR MMPWI+  KMVD+ KN
Sbjct: 301 PTIKASRRANDEHQIEVVGGKLRDMMPWISAGKMVDKEKN 340


Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 415
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 340
Length adjustment: 28
Effective length of query: 310
Effective length of database: 312
Effective search space:    96720
Effective search space used:    96720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate GFF644 PGA1_c06580 (ketol-acid reductoisomerase IlvC)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.8732.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8732.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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