Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate GFF2902 PGA1_c29490 dihydroxy-acid dehydratase LivD
Query= SwissProt::Q1MIB2
(612 letters)
>FitnessBrowser__Phaeo:GFF2902
Length = 614
Score = 926 bits (2394), Expect = 0.0
Identities = 461/610 (75%), Positives = 522/610 (85%), Gaps = 1/610 (0%)
Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
MP+YRSRT+THGRNMAGARGLWRATGM D DFGKPIIA+VNSFTQFVPGHVHLKDLGQ+V
Sbjct: 1 MPMYRSRTSTHGRNMAGARGLWRATGMTDDDFGKPIIAIVNSFTQFVPGHVHLKDLGQMV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
ARE+EAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRE+IADSVEYMVNAHCADAMVCIS
Sbjct: 61 AREVEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREVIADSVEYMVNAHCADAMVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKV-VMHGKTHALDLVDAMVAAADDKISDE 179
NCDKITPGMLMA++RLNIP +FVSGGPMEAGK+ + +DLVDAMVAAA D ++DE
Sbjct: 121 NCDKITPGMLMAAMRLNIPAIFVSGGPMEAGKIDIADLDMKKIDLVDAMVAAASDTMTDE 180
Query: 180 DVQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLI 239
VQ IE +ACPTCGSCSGMFTANSMNCL EALGL+LPGNGSTLATH DRK LF+EAG I
Sbjct: 181 QVQHIEENACPTCGSCSGMFTANSMNCLAEALGLALPGNGSTLATHADRKHLFLEAGRKI 240
Query: 240 VDLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMA 299
VD+ +R+Y ++ LPR IA+ AFENAM+LDIAMGGSTNTVLH+LA A+EG++DFTM
Sbjct: 241 VDITKRHYVGEEKGLLPREIATFDAFENAMSLDIAMGGSTNTVLHLLAIANEGKVDFTMT 300
Query: 300 DIDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGD 359
D+D LSR+VPCL KVAP +VHMEDVHRAGGI SILGEL + GLL+ +C TVH+ T+G+
Sbjct: 301 DMDRLSRKVPCLCKVAPNIENVHMEDVHRAGGIFSILGELSRAGLLHNECSTVHSSTMGE 360
Query: 360 AIDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKD 419
AI +WDI N+ ++AAPGG+ T AFSQ R+ ELDTDRE GVIRS +H FS+D
Sbjct: 361 AIAKWDIKVANNPDAEALFKAAPGGVRTTEAFSQSNRYKELDTDREGGVIRSKDHAFSQD 420
Query: 420 GGLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIR 479
GGLAVL GN+A DGCIVKTAGVD++ILKF+G A V ESQD +V IL ++VK GDVVVIR
Sbjct: 421 GGLAVLFGNIARDGCIVKTAGVDDNILKFTGSAYVCESQDQAVNDILTSKVKEGDVVVIR 480
Query: 480 YEGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIG 539
YEGP+GGPGMQEMLYPTSYLKSKGLGKACAL+TDGRFSGGTSGLSIGH SPEAA GGTIG
Sbjct: 481 YEGPRGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHVSPEAAEGGTIG 540
Query: 540 LVREGDMIDIDIPNRTISLRVSETELAARRAEQDAKGWYPTEVRKRNVTTALKAYAAFAT 599
LV++GD I+IDIPNRTI L VS+ ELAARRA QDA GW P + RKR V+TALKAYA AT
Sbjct: 541 LVQQGDTIEIDIPNRTIHLAVSDEELAARRAAQDAAGWKPVKPRKRKVSTALKAYALLAT 600
Query: 600 SADRGAVRDL 609
SA +GAVR L
Sbjct: 601 SAAKGAVRAL 610
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1211
Number of extensions: 29
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 614
Length adjustment: 37
Effective length of query: 575
Effective length of database: 577
Effective search space: 331775
Effective search space used: 331775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate GFF2902 PGA1_c29490 (dihydroxy-acid dehydratase LivD)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.22120.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22120.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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