Alignments for a candidate for ilvH in Phaeobacter inhibens BS107

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate GFF1988 PGA1_c20220 acetolactate synthase isozyme 3 small subunit

Query= BRENDA::P00894
         (163 letters)



>FitnessBrowser__Phaeo:GFF1988
          Length = 186

 Score =  127 bits (320), Expect = 8e-35
 Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 2   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP-TLSRMTIQTVGDEKVLEQI 60
           R  +++L+ENE G L+RVIGLFS RGYNI+SLTVA  D    LSR+TI T G  +V+EQI
Sbjct: 28  RHTITILVENEPGVLARVIGLFSGRGYNIDSLTVAEVDHTGHLSRITIVTTGTPQVIEQI 87

Query: 61  EKQLHKLVDVLRVSELG-QGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 119
           + QL ++V V  V++L   G  VERE+ +VK+   G  R E  R  EIFR +++D T + 
Sbjct: 88  KAQLGRIVSVHEVTDLTVAGPFVERELAIVKVVGEGEKRVEAMRLAEIFRAKVVDTTLNS 147

Query: 120 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 159
           +  +L G   K+DAF   +R +  + ++AR+GV  L RG+
Sbjct: 148 FIFELTGAPDKIDAFAEMMRPLG-LTKIARTGVAALLRGN 186


Lambda     K      H
   0.318    0.136    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 186
Length adjustment: 19
Effective length of query: 144
Effective length of database: 167
Effective search space:    24048
Effective search space used:    24048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)

Align candidate GFF1988 PGA1_c20220 (acetolactate synthase isozyme 3 small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.23518.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23518.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.