Alignments for a candidate for leuA in Phaeobacter inhibens BS107

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate GFF2606 PGA1_c26470 2-isopropylmalate synthase LeuA

Query= BRENDA::Q9JZG1
         (517 letters)



>FitnessBrowser__Phaeo:GFF2606
          Length = 523

 Score =  484 bits (1246), Expect = e-141
 Identities = 252/498 (50%), Positives = 341/498 (68%), Gaps = 4/498 (0%)

Query: 5   NRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIA 64
           +RV+IFDTTLRDGEQSPGA MT +EK+ +A  L+ +GVDIIEAGF  AS GDF+AV+ IA
Sbjct: 8   DRVLIFDTTLRDGEQSPGATMTHDEKLEIAELLDDMGVDIIEAGFPIASEGDFKAVSEIA 67

Query: 65  KTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAA 124
           +    S +C L+RA  +DI +  EAV  A + RIHTFI TSP+H      +   ++ E  
Sbjct: 68  ERSKNSRICGLARANFKDIDRCAEAVKRAAQPRIHTFIGTSPLHRAIP-NLTKDEMAEKI 126

Query: 125 VKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEE 184
              V  AR   D+V++S  DA R+E D+L  +    I+AGATTINIPDTVGY+ P ++ +
Sbjct: 127 HDTVTHARNLVDNVQWSPMDATRTEWDYLCRVIEIAIKAGATTINIPDTVGYTAPVESAD 186

Query: 185 FFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVE 244
             + LI   P    V+++ HCHNDLG+A ANSLAA+ GGARQ+ECT+NGLGERAGN ++E
Sbjct: 187 LIKRLIETVPGADDVIFATHCHNDLGMATANSLAAVAGGARQIECTINGLGERAGNTALE 246

Query: 245 EIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQD 304
           E+VMALKVR+D+    TGIDT +I+  S+ VST++G+ VQPNKAIVG NAF+HESGIHQD
Sbjct: 247 EVVMALKVRNDIMPFTTGIDTQKIMHISRRVSTVSGFVVQPNKAIVGKNAFAHESGIHQD 306

Query: 305 GVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFK 364
           G+LK++ET+EIM  E VG A   L LGK SGR A + KL+ LG E+  +  L   F RFK
Sbjct: 307 GMLKNKETFEIMRPEDVGIAGTSLPLGKHSGRAALRDKLSQLGFEV-GDNQLKDLFVRFK 365

Query: 365 ELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRA 424
           ELAD+K+E+FD+D+ AL+         +  K +S K+   TG    A +   ++G++   
Sbjct: 366 ELADRKKEVFDDDIIALM--RTSGDEDDHLKLVSMKVVCGTGGPAEATLEMEVEGKDVSE 423

Query: 425 SATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGAD 484
           +A G GPVDA F+AI  +  + A LQ+Y V+AVT+GT++Q   SVRL     +  G+ A+
Sbjct: 424 TAEGDGPVDAAFRAIRKIHPNSAHLQLYQVHAVTEGTDAQATVSVRLEENGVIATGESAN 483

Query: 485 TDVLVATAKAYLSALSKL 502
           TD +VA+A AY+ AL++L
Sbjct: 484 TDTVVASAAAYIGALNRL 501


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 636
Number of extensions: 21
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 523
Length adjustment: 35
Effective length of query: 482
Effective length of database: 488
Effective search space:   235216
Effective search space used:   235216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate GFF2606 PGA1_c26470 (2-isopropylmalate synthase LeuA)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.25102.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25102.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.