Alignments for a candidate for dapB in Phaeobacter inhibens BS107

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate GFF3239 PGA1_c32920 dihydrodipicolinate reductase DapB

Query= BRENDA::Q2YJN7
         (268 letters)



>FitnessBrowser__Phaeo:GFF3239
          Length = 273

 Score =  306 bits (785), Expect = 2e-88
 Identities = 154/265 (58%), Positives = 194/265 (73%), Gaps = 1/265 (0%)

Query: 2   GLVVVGAGGRMGQTLIRTIQSIEGAKLVGAIERSGSPFLGKDAGEVTGIGTLGVAITDDP 61
           G+V+ GA GRMGQ LI+TI     A LVGA+ER G  ++G+D G   G   +G+ +TDD 
Sbjct: 10  GIVITGASGRMGQMLIKTIADHPRAHLVGAVEREGHDWVGQDVGLAMGGSEIGITVTDDA 69

Query: 62  LPVFAKAHGVLDFTSPAASVEFAGLAAQARIVHVIGTTGCSAEDDEKIRAAARHATIVKS 121
              FAKA  V+DFTSP A++ FAG+AA+A +VHVIGTTG +     ++  A+RH+  +++
Sbjct: 70  PAAFAKAQAVIDFTSPEATIAFAGMAAEAGVVHVIGTTGMNDAQIVQLEPASRHSVQMRA 129

Query: 122 GNMSLGVNLLSVLVQKAAEALGPEDFDIEILEMHHRHKVDAPSGTALLLGEAAARGRDIA 181
           GNMSLGVNLL  L +K A AL  EDFDIE++E HH HKVDAPSGTAL+LGEAAA GR + 
Sbjct: 130 GNMSLGVNLLVQLTKKVAAALD-EDFDIEVIEAHHHHKVDAPSGTALMLGEAAAEGRGVT 188

Query: 182 LADNSVRVRDGYTGPRETGAIGFATLRGGSVIGDHSVILAGTGERVVLSHHAEDRSIFAR 241
           L+D S   RDG TG R+ G IGF+ +RGG ++G+H V+ AG GER+VL H A DR+IFAR
Sbjct: 189 LSDVSDSGRDGITGARKRGDIGFSAIRGGDIVGEHDVLFAGQGERIVLRHLATDRAIFAR 248

Query: 242 GAIKAALWAHGKKPGLYSMLDVLGL 266
           GAIKAALW  GK+PG Y MLDVLGL
Sbjct: 249 GAIKAALWGQGKEPGQYDMLDVLGL 273


Lambda     K      H
   0.318    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 281
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 273
Length adjustment: 25
Effective length of query: 243
Effective length of database: 248
Effective search space:    60264
Effective search space used:    60264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate GFF3239 PGA1_c32920 (dihydrodipicolinate reductase DapB)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.1290.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1290.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.