Alignments for a candidate for argB in Phaeobacter inhibens BS107

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate GFF201 PGA1_c02050 acetylglutamate kinase ArgB

Query= BRENDA::Q9HTN2
         (301 letters)



>FitnessBrowser__Phaeo:GFF201
          Length = 286

 Score =  288 bits (737), Expect = 1e-82
 Identities = 149/289 (51%), Positives = 202/289 (69%), Gaps = 13/289 (4%)

Query: 7   DAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVH 66
           D    A+ LS ALPY++R+ G  +V+K GG+AM S+E    FARD+VL++ VG+NPV+VH
Sbjct: 9   DWIATAETLSSALPYLQRYDGAIVVVKLGGHAMGSDEAMETFARDIVLLRQVGVNPVIVH 68

Query: 67  GGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGL 126
           GGGP I  +L++L I+S F++G RVTDAATM+VVEMVL G VNK IV  INR GG+ +GL
Sbjct: 69  GGGPMINAMLEKLQIKSDFVNGKRVTDAATMEVVEMVLSGVVNKRIVQAINRQGGAGVGL 128

Query: 127 TGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIG 186
           +GKDA LI     T T+  P        D+G VG  + ++  +L+ L + D IPVIAPIG
Sbjct: 129 SGKDANLI-----TCTQADP--------DLGFVGTPSQMDPSVLHHLFEQDMIPVIAPIG 175

Query: 187 VGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADG 246
            G +GE++NIN D  AG +A ALKA++L+LLT+++G+ +  G+V+T L    V  +  DG
Sbjct: 176 AGPDGETFNINGDTAAGAIASALKADRLLLLTDVSGVKNGAGEVVTELKAADVEAMTRDG 235

Query: 247 TIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295
            I GGM+PK   AL AV+ GV +  I+DGRVPNAVLLE+FTD G G++I
Sbjct: 236 VIIGGMIPKTETALAAVRSGVRACTIVDGRVPNAVLLELFTDHGAGSMI 284


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 283
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 286
Length adjustment: 26
Effective length of query: 275
Effective length of database: 260
Effective search space:    71500
Effective search space used:    71500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate GFF201 PGA1_c02050 (acetylglutamate kinase ArgB)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.23925.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23925.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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