Alignments for a candidate for argE in Phaeobacter inhibens BS107

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate GFF769 PGA1_c07830 acetylornithine deacetylase ArgE

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__Phaeo:GFF769
          Length = 384

 Score =  261 bits (667), Expect = 2e-74
 Identities = 142/382 (37%), Positives = 204/382 (53%), Gaps = 16/382 (4%)

Query: 2   QAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEA 61
           Q   IL  L+ + +V    N ++++++   LE  G  VDV+    G ++N+FAT+GP   
Sbjct: 4   QTTRILSDLIAYPTVSADSNLEMIAYLANRLEDCGARVDVMFDAGGQKANLFATLGPDTD 63

Query: 62  RGYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPL 121
            G ++SGH DVVP  +  WTSDPF +     RLYGRGT DMKGF+AA LA  PK A    
Sbjct: 64  GGIVLSGHSDVVPVTDQDWTSDPFTMEEWDGRLYGRGTCDMKGFIAATLAMAPKFAEQIS 123

Query: 122 RRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTV 181
           RRP+H A +YDEE GC G  H++  L E   +P  A+IGEPT MR +  HKG        
Sbjct: 124 RRPIHFAFTYDEEVGCIGAGHLVQALRERGLKPRLALIGEPTSMRVVEGHKGCHEYSTRF 183

Query: 182 RGRSGHSSRPDQGLNAIHGVAGVLTQAV-AEADRLVGGPFEHVFEPPYSSLQIGTVKGGQ 240
           +G  GH S P +G+NA+   A  +++ +    D     P +  F+PP+++L IG + GG 
Sbjct: 184 QGLEGHGSNPGRGVNAVEYAARYVSRLLDLRGDLQQRTPPDSRFDPPWTTLNIGALNGGS 243

Query: 241 AVNIIPDSCEVEFEARAISGVDP-----------AELLAPVRKTAEALTTLGFEVEWQEL 289
           A N+I    +V++E R +   D             + L P  +      ++  EV  +  
Sbjct: 244 AHNVIASKAQVDWEMRPVQPSDADHVKDTMARYCRDTLLPAMQAIYPEASIETEVVGEVA 303

Query: 290 SAYPALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKP 349
              P    E       L+ +L G  A   V +GTEAGLFQ  G+D ++CGPG I +AHK 
Sbjct: 304 GLTPTTQNE----ARELMADLLGSNAAELVPFGTEAGLFQELGMDVVVCGPGSIAQAHKA 359

Query: 350 DEYILIDELMACRAMVEALGAR 371
           DEY+ +D+L  C  ++  L  R
Sbjct: 360 DEYLSLDQLSQCLTVLNRLAGR 381


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 366
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 384
Length adjustment: 30
Effective length of query: 344
Effective length of database: 354
Effective search space:   121776
Effective search space used:   121776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate GFF769 PGA1_c07830 (acetylornithine deacetylase ArgE)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.16558.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16558.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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