Alignments for a candidate for serB in Phaeobacter inhibens BS107

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate GFF3562 PGA1_c36160 phosphoserine phosphatase SerB

Query= SwissProt::Q58989
         (211 letters)



>FitnessBrowser__Phaeo:GFF3562
          Length = 309

 Score =  165 bits (418), Expect = 7e-46
 Identities = 92/206 (44%), Positives = 130/206 (63%), Gaps = 1/206 (0%)

Query: 3   KKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKD 62
           ++KK++L D DST++  E IDE+A EAGV   VK+IT  AM G+LNF+ +LR+RV+LLK 
Sbjct: 92  RRKKMLLADMDSTMIQQECIDELAEEAGVGARVKEITARAMNGELNFDGALRERVALLKG 151

Query: 63  LPIEKVEKAI-KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFAN 121
           LP+E + + + +RIT   G    +  +K  G   A+VSGGF    +++ E+LG D   AN
Sbjct: 152 LPVEVIAQVLDRRITLMPGGAALLATMKADGAYAALVSGGFTAFTSRVAEQLGFDENRAN 211

Query: 122 RLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLK 181
            L+V DG LTG+V   +L   AK E LE+I    G++  D +AVGDGAND+ M  +AG  
Sbjct: 212 TLLVADGLLTGEVGMPILGRAAKVEALEQITARLGLSEADVMAVGDGANDLGMLGRAGAG 271

Query: 182 IAFCAKPILKEKADICIEKRDLREIL 207
           +A  AKP +  + DI I   DL  +L
Sbjct: 272 VALHAKPSVAAECDIRINHGDLTALL 297


Lambda     K      H
   0.314    0.136    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 148
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 309
Length adjustment: 24
Effective length of query: 187
Effective length of database: 285
Effective search space:    53295
Effective search space used:    53295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate GFF3562 PGA1_c36160 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.6526.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6526.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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