Alignments for a candidate for thrC in Phaeobacter inhibens BS107

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate GFF617 PGA1_c06310 threonine synthase ThrC

Query= BRENDA::Q8YFS0
         (463 letters)



>FitnessBrowser__Phaeo:GFF617
          Length = 462

 Score =  518 bits (1335), Expect = e-151
 Identities = 264/460 (57%), Positives = 333/460 (72%), Gaps = 1/460 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           MKY+STRG+AP L F DA+L GLARDGGLY+P E P  + ++I AL G SY EVA  V+ 
Sbjct: 1   MKYISTRGQAPELTFEDAMLTGLARDGGLYVPAEIPTMSKDEIAALAGLSYEEVAFRVMR 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PF G      +F  ++  AY  F H A  PLVQ   N F+LELFHGPTLAFKD AMQL+ 
Sbjct: 61  PFLGDCFTDEEFRGIIARAYDGFGHAARAPLVQLAPNHFLLELFHGPTLAFKDFAMQLIG 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           ++ +  L +RGE  TIVGATSGDTG AAI+AFGG D  ++FIL+P+GRVS VQ+RQMT+ 
Sbjct: 121 QLFETALKRRGESVTIVGATSGDTGSAAIQAFGGLDAVNVFILYPHGRVSEVQRRQMTTP 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
             +NVHAL+++G+FDDCQ  +K MFND +F D + L+GVNSIN+AR++ QVVYYFT+A+S
Sbjct: 181 TDANVHALAVDGDFDDCQAALKDMFNDFDFRDEVRLAGVNSINFARVLAQVVYYFTSAVS 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAP+R VSFTVPTGNFGDIFAG++AK+MGLPI+QL++ATN NDIL R L    Y     
Sbjct: 241 LGAPERKVSFTVPTGNFGDIFAGFIAKQMGLPIDQLVVATNQNDILHRCLSGQGYHKGET 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             + SPSMDIQ+SSNFER LF A G+D AAV  LM  LK SGGF +S+  + A++  + +
Sbjct: 301 IPSISPSMDIQVSSNFERALFYACGQDGAAVAQLMDELK-SGGFEVSQGAMQALQEHYVS 359

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKASGTAPMVVLATAHPAKFPDAVK 420
           GR + +ET+ATI+S  +  G LL PHSAIGVKVA E+     PMV LATAHPAKFP AV+
Sbjct: 360 GRCSEEETSATIKSERAASGELLCPHSAIGVKVANEQRDAAVPMVTLATAHPAKFPAAVE 419

Query: 421 AACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHH 460
            A G+ P LP  + DL  R E  T + N+L  +E ++R H
Sbjct: 420 EASGIHPPLPPRMADLYDRSERVTRIANDLTTLETHIRKH 459


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 570
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 462
Length adjustment: 33
Effective length of query: 430
Effective length of database: 429
Effective search space:   184470
Effective search space used:   184470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate GFF617 PGA1_c06310 (threonine synthase ThrC)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.31652.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31652.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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