Alignments for a candidate for trpD_1 in Phaeobacter inhibens BS107

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate GFF1665 PGA1_c16880 anthranilate synthase component II

Query= SwissProt::P26922
         (196 letters)



>FitnessBrowser__Phaeo:GFF1665
          Length = 193

 Score =  275 bits (702), Expect = 5e-79
 Identities = 130/190 (68%), Positives = 150/190 (78%)

Query: 1   MLLLIDNYDSFTYNLVHYLGELGAELDVRRNDSLTVEEAMALRPEGIVLSPGPCDPDKAG 60
           MLLLIDNYDSFTYNLVHYLGELGA++ V RND+L V+EAMA+ P GI+LSPGPCDPD+AG
Sbjct: 1   MLLLIDNYDSFTYNLVHYLGELGADVQVHRNDALNVQEAMAMNPAGILLSPGPCDPDQAG 60

Query: 61  ICLPLIDAAAKAAVPLMGVCLGHQAIGQPFGGTVVRAPVPMHGKVDRMFHQGRGVLKDLP 120
           ICL L +AAA+   PL+GVCLGHQ IGQ FGG VVR    +HGK+  M H   G+   LP
Sbjct: 61  ICLALTEAAAETQTPLLGVCLGHQTIGQAFGGNVVRCKDIVHGKMGTMHHTDTGLFAGLP 120

Query: 121 SPFRATRYHSLIVERATLPACLEVTGETEDGLIMALSHRELPIHGVQFHPESIESEHGHK 180
           SPF ATRYHSLIV+R TLP  LE+T E +DG IM L H+ LPIHGVQFHPESI SEHGH 
Sbjct: 121 SPFEATRYHSLIVDRDTLPDSLEITAELDDGTIMGLQHKTLPIHGVQFHPESIASEHGHA 180

Query: 181 ILENFLNTTR 190
           +L+NFLN  +
Sbjct: 181 LLKNFLNVMK 190


Lambda     K      H
   0.321    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 200
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 193
Length adjustment: 20
Effective length of query: 176
Effective length of database: 173
Effective search space:    30448
Effective search space used:    30448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)

Align candidate GFF1665 PGA1_c16880 (anthranilate synthase component II)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.17974.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17974.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.