Alignments for a candidate for trpD_2 in Phaeobacter inhibens BS107

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate GFF1666 PGA1_c16890 anthranilate phosphoribosyltransferase TrpD

Query= SwissProt::P83827
         (329 letters)



>FitnessBrowser__Phaeo:GFF1666
          Length = 342

 Score =  229 bits (583), Expect = 1e-64
 Identities = 137/311 (44%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 13  LEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRP 72
           L  EEA      L  G  +P +  GLL+AL  RGE   E AA A  MR    P+ V    
Sbjct: 17  LSREEAEAAFTQLFEGNATPSQMGGLLMALRTRGETVDEYAAAAAVMRAKCNPV-VAPAG 75

Query: 73  LLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAP 132
            +DIVGTGGDGKG +N+ST  A V A  G  VAKHGNR  SS++G+AD L  +G+++   
Sbjct: 76  AMDIVGTGGDGKGTLNISTATAFVVAGAGTVVAKHGNRNLSSKSGAADALGQMGINVMVG 135

Query: 133 PERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGV 192
           P+   +A+ E G  F+ A + HPA+ HV P R ELG RT+FN+LGPLTNPAG    + G 
Sbjct: 136 PKVAEQALREAGICFMMAPMHHPAIAHVMPTRQELGTRTIFNILGPLTNPAGVKRQLTGA 195

Query: 193 FSPEWLAPMAEALERLGA-RGLVVHG-EGADEL-VLGENRVVEVGKGA----YALTPEEV 245
           FS + + PMAE L +LG+ +  +VHG +G DEL + G + V  +  G       + PE+ 
Sbjct: 196 FSRDLIRPMAETLGQLGSEQAWLVHGSDGTDELTITGVSWVAALNPGGSVTEMEIHPEDA 255

Query: 246 GLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVA 305
           GL   P EA+ GG PEENA     LL GE      DAV L + A    AG    LK G  
Sbjct: 256 GLSVHPFEAIVGGTPEENAKAFAALLSGEASA-YRDAVLLNSAAALVVAGAASDLKTGAE 314

Query: 306 LAREVLASGEA 316
           +AR  + SG A
Sbjct: 315 MARASIDSGAA 325


Lambda     K      H
   0.317    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 297
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 342
Length adjustment: 28
Effective length of query: 301
Effective length of database: 314
Effective search space:    94514
Effective search space used:    94514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate GFF1666 PGA1_c16890 (anthranilate phosphoribosyltransferase TrpD)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.18141.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18141.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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