Alignments for a candidate for trpE in Phaeobacter inhibens BS107

Align Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 (characterized)
to candidate GFF1663 PGA1_c16860 anthranilate synthase component 1

Query= SwissProt::P20579
         (493 letters)



>FitnessBrowser__Phaeo:GFF1663
          Length = 503

 Score =  420 bits (1080), Expect = e-122
 Identities = 239/494 (48%), Positives = 319/494 (64%), Gaps = 21/494 (4%)

Query: 4   EEFLRLAAVGYNRIPLACETLADFDTPLSIYLKLAD-QPNSYLLESVQGGEKWGRYSMIG 62
           + F +    G N++ +     AD DTP+S+ LKL   Q ++++LESV GGE  GRYS+IG
Sbjct: 8   DTFAKAYEAGENQV-VYTRLAADLDTPVSLMLKLTGAQKDAFILESVTGGEVRGRYSIIG 66

Query: 63  LPSRTVMRVHGYHVSILHDG-VEVESHDVED--PLAFVESFKDRYKVADIPG-LPRFNGG 118
           +    V R HG   ++      + ++ +  D  PL  +       K+ D+P  LP+   G
Sbjct: 67  MKPDLVWRCHGERAALNRSARFDADAFEPLDGNPLDCLRDLIAESKI-DLPDDLPQAAAG 125

Query: 119 LVGYFGYDCVRYVEKRLGVSPNPDPLGVPDILLMVSDAVVVFDNLAGKMHAIVLVDPA-- 176
           L GY GYD +R VE    V  NPDPLG+PD L++    + V D + G+   + +V PA  
Sbjct: 126 LFGYLGYDMIRLVEHLPDV--NPDPLGLPDALMLRPSVIAVLDGVKGE---VTVVSPAWA 180

Query: 177 -----EEQAFEQGQARLQGLLETLRQPITPRRGLDLSGPQAAEPEFRSSYTREDYENAVG 231
                 + A+ Q   R+   +  L + + P    DL       P   S++T++ Y  AV 
Sbjct: 181 SDGQSAKAAYAQAAERVMDAVRDLERAM-PAESRDLGDADEVAPPV-SNFTKDGYMAAVE 238

Query: 232 RIKEYILAGDCMQVVPSQRMSIDFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPE 291
           + K+YI AGD  QVVP+QR +  F+  P  LYR+LR  NP+P+M++FNFG F VVG+SPE
Sbjct: 239 KAKDYIRAGDIFQVVPAQRWTQTFRQPPFALYRSLRRTNPSPFMFYFNFGGFQVVGASPE 298

Query: 292 VLVRVEDNLVTVRPIAGTRPRGATEEADRALEDDLLSDDKEIAEHLMLIDLGRNDVGRVS 351
           +LVRV    VT+RPIAGTRPRGAT E D+ALE DLL+D KE+AEHLML+DLGRND GRV+
Sbjct: 299 ILVRVFGQEVTIRPIAGTRPRGATPEEDKALELDLLADKKELAEHLMLLDLGRNDTGRVA 358

Query: 352 STGSVRLTEKMVIERYSNVMHIVSNVAGQLREGLTAMDALRAILPAGTLSGAPKIRAMEI 411
             G+VR TEK +IERYS+VMHIVSNV G+L E   A+DA  A +PAGT+SGAPK+RAMEI
Sbjct: 359 KIGTVRPTEKFIIERYSHVMHIVSNVVGELAEDKDALDAFFAGMPAGTVSGAPKVRAMEI 418

Query: 412 IDELEPVKRGVYGGAVGYFAWNGNMDTAIAIRTAVINDGELHVQAGGGIVADSVPALEWE 471
           IDELEP KRGVYGG VGYF+  G+MD  IA+RTA++ D  L++QAGGG+V DS P  E+ 
Sbjct: 419 IDELEPEKRGVYGGGVGYFSAGGDMDMCIALRTAIVKDQNLYIQAGGGVVYDSDPEAEYM 478

Query: 472 ETINKRRAMFRAVA 485
           ET++K  A+ RA A
Sbjct: 479 ETVHKSNAIRRAAA 492


Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 697
Number of extensions: 30
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 503
Length adjustment: 34
Effective length of query: 459
Effective length of database: 469
Effective search space:   215271
Effective search space used:   215271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate GFF1663 PGA1_c16860 (anthranilate synthase component 1)
to HMM TIGR00564 (trpE: anthranilate synthase component I (EC 4.1.3.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.25569.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25569.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.