Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate GFF2902 PGA1_c29490 dihydroxy-acid dehydratase LivD
Query= SwissProt::Q1MIB2 (612 letters) >FitnessBrowser__Phaeo:GFF2902 Length = 614 Score = 926 bits (2394), Expect = 0.0 Identities = 461/610 (75%), Positives = 522/610 (85%), Gaps = 1/610 (0%) Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60 MP+YRSRT+THGRNMAGARGLWRATGM D DFGKPIIA+VNSFTQFVPGHVHLKDLGQ+V Sbjct: 1 MPMYRSRTSTHGRNMAGARGLWRATGMTDDDFGKPIIAIVNSFTQFVPGHVHLKDLGQMV 60 Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120 ARE+EAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRE+IADSVEYMVNAHCADAMVCIS Sbjct: 61 AREVEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREVIADSVEYMVNAHCADAMVCIS 120 Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKV-VMHGKTHALDLVDAMVAAADDKISDE 179 NCDKITPGMLMA++RLNIP +FVSGGPMEAGK+ + +DLVDAMVAAA D ++DE Sbjct: 121 NCDKITPGMLMAAMRLNIPAIFVSGGPMEAGKIDIADLDMKKIDLVDAMVAAASDTMTDE 180 Query: 180 DVQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLI 239 VQ IE +ACPTCGSCSGMFTANSMNCL EALGL+LPGNGSTLATH DRK LF+EAG I Sbjct: 181 QVQHIEENACPTCGSCSGMFTANSMNCLAEALGLALPGNGSTLATHADRKHLFLEAGRKI 240 Query: 240 VDLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMA 299 VD+ +R+Y ++ LPR IA+ AFENAM+LDIAMGGSTNTVLH+LA A+EG++DFTM Sbjct: 241 VDITKRHYVGEEKGLLPREIATFDAFENAMSLDIAMGGSTNTVLHLLAIANEGKVDFTMT 300 Query: 300 DIDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGD 359 D+D LSR+VPCL KVAP +VHMEDVHRAGGI SILGEL + GLL+ +C TVH+ T+G+ Sbjct: 301 DMDRLSRKVPCLCKVAPNIENVHMEDVHRAGGIFSILGELSRAGLLHNECSTVHSSTMGE 360 Query: 360 AIDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKD 419 AI +WDI N+ ++AAPGG+ T AFSQ R+ ELDTDRE GVIRS +H FS+D Sbjct: 361 AIAKWDIKVANNPDAEALFKAAPGGVRTTEAFSQSNRYKELDTDREGGVIRSKDHAFSQD 420 Query: 420 GGLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIR 479 GGLAVL GN+A DGCIVKTAGVD++ILKF+G A V ESQD +V IL ++VK GDVVVIR Sbjct: 421 GGLAVLFGNIARDGCIVKTAGVDDNILKFTGSAYVCESQDQAVNDILTSKVKEGDVVVIR 480 Query: 480 YEGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIG 539 YEGP+GGPGMQEMLYPTSYLKSKGLGKACAL+TDGRFSGGTSGLSIGH SPEAA GGTIG Sbjct: 481 YEGPRGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHVSPEAAEGGTIG 540 Query: 540 LVREGDMIDIDIPNRTISLRVSETELAARRAEQDAKGWYPTEVRKRNVTTALKAYAAFAT 599 LV++GD I+IDIPNRTI L VS+ ELAARRA QDA GW P + RKR V+TALKAYA AT Sbjct: 541 LVQQGDTIEIDIPNRTIHLAVSDEELAARRAAQDAAGWKPVKPRKRKVSTALKAYALLAT 600 Query: 600 SADRGAVRDL 609 SA +GAVR L Sbjct: 601 SAAKGAVRAL 610 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1211 Number of extensions: 29 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 612 Length of database: 614 Length adjustment: 37 Effective length of query: 575 Effective length of database: 577 Effective search space: 331775 Effective search space used: 331775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate GFF2902 PGA1_c29490 (dihydroxy-acid dehydratase LivD)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.696.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.696.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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