Align Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 (characterized)
to candidate Synpcc7942_0711 Synpcc7942_0711 carbamoyl phosphate synthase large subunit
Query= SwissProt::Q42601
(1187 letters)
>FitnessBrowser__SynE:Synpcc7942_0711
Length = 1097
Score = 1418 bits (3671), Expect = 0.0
Identities = 715/1098 (65%), Positives = 875/1098 (79%), Gaps = 22/1098 (2%)
Query: 94 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPETAN 153
+R D++KI++LG+GPIVIGQACEFDYSGTQACKALREEGYEV+L+NSNPATIMTDPETA+
Sbjct: 3 RRQDIRKILLLGSGPIVIGQACEFDYSGTQACKALREEGYEVVLVNSNPATIMTDPETAD 62
Query: 154 RTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLGA 213
RTYI P+TPELV QVIE+ERPDALLPTMGGQTALNLAVALA++G L+++GVELIGAKL A
Sbjct: 63 RTYIEPLTPELVAQVIERERPDALLPTMGGQTALNLAVALAKNGTLDRFGVELIGAKLEA 122
Query: 214 IKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGI 273
I+KAEDR LFK+AM+ IG+K PSGI + E IAE+IG +PLIIRPAFT+GGTGGGI
Sbjct: 123 IEKAEDRLLFKEAMERIGVKVCPSGIANNMAEAQAIAEQIGTYPLIIRPAFTMGGTGGGI 182
Query: 274 AYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 333
AYN+EEFE I +SGL AS SQ+LVE+SL+GWKE+ELEVMRDLADNVVIICSIEN+DPMG
Sbjct: 183 AYNQEEFELIVQSGLDASPVSQILVEQSLIGWKEFELEVMRDLADNVVIICSIENLDPMG 242
Query: 334 VHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN 393
VHTGDSITVAPAQTLTD+EYQRLRD +IAIIREIGVE GGSN+QFA+NP DG+V++IEMN
Sbjct: 243 VHTGDSITVAPAQTLTDKEYQRLRDQAIAIIREIGVETGGSNIQFAINPQDGDVIVIEMN 302
Query: 394 PRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITRKTPASFEPSIDYVVTKIPRF 453
PRVSRSSALASKATGFPIAK+AAKL+VGY+LD++ NDITR+TPASFEP+IDYVVTKIPRF
Sbjct: 303 PRVSRSSALASKATGFPIAKIAAKLAVGYSLDELKNDITRQTPASFEPTIDYVVTKIPRF 362
Query: 454 AFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKALRSLECGFSGWGCAKIKELDWDWD 513
AFEKFPG+ LTT MKSVGE+MA+GRTF ESFQKALRSLE G SGWGC + + L +
Sbjct: 363 AFEKFPGTPAQLTTMMKSVGEAMAIGRTFPESFQKALRSLEIGRSGWGCDRPETLP-TLE 421
Query: 514 QLKYSLRVPNPDRIHAIYAAMKKGMKIDEIYELSMVDKWFLTQLKELVDVEQYLMSGTLS 573
Q+K LR P+PDRI A+ AM G+ +IY+L+ +D WFL + +E+++ E +L ++
Sbjct: 422 QIKPQLRTPSPDRIFAVRQAMLLGLSDGDIYQLTGIDPWFLEKFREILEGEDFLKRASIE 481
Query: 574 EITKEDLYEVKKRGFSDKQIAFATKTTEEEVRTKRISLGVVPSYKRVDTCAAEFEAHTPY 633
+IT EVK+ GFSD+QIAFA ++EE VR +R G+ P YK VDTCAAEFEA+TPY
Sbjct: 482 QITPAQWLEVKQLGFSDRQIAFALGSSEEAVRQRRQQQGIKPVYKLVDTCAAEFEAYTPY 541
Query: 634 MYSSYD---------------VECESAPNNKKKVLILGGGPNRIGQGIEFDYCCCHTSFA 678
YS Y+ E E P+++ KV+ILGGGPNRIGQGIEFDYCCCH +FA
Sbjct: 542 YYSCYESPRSHLAESGLTTIPAESEVRPSDRPKVMILGGGPNRIGQGIEFDYCCCHAAFA 601
Query: 679 LQDAGYETIMLNSNPETVSTDYDTSDRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQTPL 738
L GYETIM+NSNPETVSTDYDTSDRLYFEPLT EDVLN+++ E+P G+I+QFGGQTPL
Sbjct: 602 LAADGYETIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNILEAERPQGVIIQFGGQTPL 661
Query: 739 KLALPIKHYLDKHMPMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIA 798
KLA+P++ +L +L +IWGTSPDSID AEDRERF IL +L I QP G+A
Sbjct: 662 KLAVPLQTFLQTPEGQALG----TQIWGTSPDSIDTAEDRERFEQILRQLDIAQPANGLA 717
Query: 799 KSEADALAIAKEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVDKY 858
+S +ALAIA +GYP VVRPSYVLGGRAMEIVY D+ L Y+ AVQV+P+ P+L+DK+
Sbjct: 718 RSPEEALAIAHRIGYPTVVRPSYVLGGRAMEIVYSDAELERYMTEAVQVEPDHPILIDKF 777
Query: 859 LSDAIEIDVDTLTDSYGNVVIGGIMEHIEQAGVHSGDSACMLPTQTIPASCLQTIRTWTT 918
L +AIE+DVD L D G VVIGGIMEHIEQAG+HSGDSAC LPT ++ + L+TIR WTT
Sbjct: 778 LENAIEVDVDALADRTGQVVIGGIMEHIEQAGIHSGDSACSLPTVSLNETVLETIRAWTT 837
Query: 919 KLAKKLNVCGLMNCQYAITTSGDVFLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKS 978
+LAK LNV GLMN Q+A+ V++LEANPRASRTVPFVSKAIG PLAK AA +MSG++
Sbjct: 838 QLAKALNVIGLMNIQFAVKDE-QVYILEANPRASRTVPFVSKAIGRPLAKIAARLMSGQT 896
Query: 979 LKDLNFEKEVIPKHVSVKEAVFPFEKFQGCDVILGPEMRSTGEVMSISSEFSSAFAMAQI 1038
L DL E++P ++SVKEAV PF++F G D +LGPEMRSTGEVM I +F AFA A++
Sbjct: 897 LADLGITSELVPSYLSVKEAVLPFDRFPGTDTLLGPEMRSTGEVMGIDVDFGRAFAKAEL 956
Query: 1039 AAGQKLPLSGTVFLSLNDMTKPHLEKIAVSFLELGFKIVATSGTAHFLELKGIPVERVLK 1098
AA Q+LP GTVF+S++D K + IA FL+LGF++VAT GT L + + VE +LK
Sbjct: 957 AASQRLPRQGTVFISVSDRDKAAIGPIAREFLQLGFRVVATGGTQKVLAEQRLSVEPILK 1016
Query: 1099 LHEGRPHAADMVANGQIHLMLITSSGDALDQKDGRQLRQMALAYKVPVITTVAGALATAE 1158
+HEGRPH D + N QI L++ T +G A + D + +R+ AL YKVP +TT+AGA AT E
Sbjct: 1017 VHEGRPHVLDALKNDQIQLIINTPAG-ARAKVDDQIIRRAALDYKVPTVTTIAGAKATVE 1075
Query: 1159 GIKSLKSSAIKMTALQDF 1176
I++L +++ +LQD+
Sbjct: 1076 AIRALLEQPLQVKSLQDY 1093
Score = 240 bits (612), Expect = 5e-67
Identities = 150/420 (35%), Positives = 229/420 (54%), Gaps = 19/420 (4%)
Query: 75 PVSELADT--TTKPFSPEIVGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEG 132
P S LA++ TT P E+ + +D K+MILG GP IGQ EFDY A AL +G
Sbjct: 549 PRSHLAESGLTTIPAESEV--RPSDRPKVMILGGGPNRIGQGIEFDYCCCHAAFALAADG 606
Query: 133 YEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVA 192
YE I++NSNP T+ TD +T++R Y P+T E V ++E ERP ++ GGQT L LAV
Sbjct: 607 YETIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNILEAERPQGVIIQFGGQTPLKLAVP 666
Query: 193 L---AESGALEKYGVELIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDI 249
L ++ + G ++ G +I AEDRE F+ ++ + + P +G+ + +E I
Sbjct: 667 LQTFLQTPEGQALGTQIWGTSPDSIDTAEDRERFEQILRQLDIAQPANGLARSPEEALAI 726
Query: 250 AEKIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYE 309
A +IG +P ++RP++ LGG I Y+ E E + +L++K L E +
Sbjct: 727 AHRIG-YPTVVRPSYVLGGRAMEIVYSDAELERYMTEAVQVEPDHPILIDKFLENAIEVD 785
Query: 310 LEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGV 369
++ + D VVI +E+I+ G+H+GDS P +L + + +R ++ + + + V
Sbjct: 786 VDALADRTGQVVIGGIMEHIEQAGIHSGDSACSLPTVSLNETVLETIRAWTTQLAKALNV 845
Query: 370 ECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPN 429
G N+QFAV D +V I+E NPR SR+ SKA G P+AK+AA+L G TL +
Sbjct: 846 -IGLMNIQFAVK--DEQVYILEANPRASRTVPFVSKAIGRPLAKIAARLMSGQTLADL-- 900
Query: 430 DITRKTPASFEPSIDYVVTKIPRFAFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKA 489
IT + S Y+ K F++FPG+ LL +M+S GE M + F +F KA
Sbjct: 901 GITSELVPS------YLSVKEAVLPFDRFPGTDTLLGPEMRSTGEVMGIDVDFGRAFAKA 954
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3232
Number of extensions: 126
Number of successful extensions: 16
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 1187
Length of database: 1097
Length adjustment: 46
Effective length of query: 1141
Effective length of database: 1051
Effective search space: 1199191
Effective search space used: 1199191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate Synpcc7942_0711 Synpcc7942_0711 (carbamoyl phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.23660.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23660.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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